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View Structure Prediction Details

Protein: FSHB_HORSE
Organism: Equus caballus
Length: 129 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FSHB_HORSE.

Description E-value Query
Range
Subject
Range
gi|73948014 - gi|73948014|ref|XP_533624.2| PREDICTED: similar to Lutropin beta chain precursor (Luteinizing hormon...
186.0 [0..10] [128..356]
gi|81295283 - gi|81295283|dbj|BAE48271.1| follicle stimulating hormone beta-subunit precursor protein [Mesocricetu...
180.0 [0..1] [129..1]
gi|89274058 - gi|89274058|dbj|BAE80738.1| follicle stimulating hormone beta-subunit precursor protein [Phodopus su...
179.0 [0..1] [129..1]
FSHB_MOUSE - Follitropin subunit beta OS=Mus musculus GN=Fshb PE=2 SV=1
179.0 [0..1] [129..2]
FSHB_MASCO - Follitropin subunit beta OS=Mastomys coucha GN=FSHB PE=2 SV=1
177.0 [0..1] [129..2]
gi|86439875 - gi|86439875|dbj|BAE78968.1| follicle stimulating hormone beta-subunit precursor protein [Cricetulus ...
177.0 [0..1] [129..1]
gi|75992453 - gi|75992453|dbj|BAE45118.1| follicle stimulating hormone beta-subunit precursor protein [Cricetulus ...
176.0 [0..1] [129..1]
FSHB_MERUN - Follitropin subunit beta OS=Meriones unguiculatus GN=FSHB PE=2 SV=1
176.0 [0..1] [129..1]
gi|108743544 - gi|108743544|dbj|BAE95635.1| follicle stimulating hormone beta-subunit precursor protein [Microtus m...
175.0 [0..1] [129..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVQFCFLF CCWKAVCCNS CELTNITIAV EKEECGFCIS INTTWCAGYC YTRDLVYKDP  60
   61 ARPNIQKTCT FKELVYETVK VPGCAHHADS LYTYPVATAC HCGKCNSDST DCTVRGLGPS 120
  121 YCSFGDMKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.221849
Match: 1xwdB
Description: Crystal Structure of Human Follicle Stimulating Hormone Complexed with its Receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle