YRC Public Data Repository - Protein Structure Prediction

Protein:	FSHB_HORSE
Organism:	Equus caballus
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FSHB_HORSE.

Description	E-value	Query Range	Subject Range
gi\|73948014 - gi\|73948014\|ref\|XP_533624.2\| PREDICTED: similar to Lutropin beta chain precursor (Luteinizing hormon...	186.0	[0..10]	[128..356]
gi\|81295283 - gi\|81295283\|dbj\|BAE48271.1\| follicle stimulating hormone beta-subunit precursor protein [Mesocricetu...	180.0	[0..1]	[129..1]
gi\|89274058 - gi\|89274058\|dbj\|BAE80738.1\| follicle stimulating hormone beta-subunit precursor protein [Phodopus su...	179.0	[0..1]	[129..1]
FSHB_MOUSE - Follitropin subunit beta OS=Mus musculus GN=Fshb PE=2 SV=1	179.0	[0..1]	[129..2]
FSHB_MASCO - Follitropin subunit beta OS=Mastomys coucha GN=FSHB PE=2 SV=1	177.0	[0..1]	[129..2]
gi\|86439875 - gi\|86439875\|dbj\|BAE78968.1\| follicle stimulating hormone beta-subunit precursor protein [Cricetulus ...	177.0	[0..1]	[129..1]
gi\|75992453 - gi\|75992453\|dbj\|BAE45118.1\| follicle stimulating hormone beta-subunit precursor protein [Cricetulus ...	176.0	[0..1]	[129..1]
FSHB_MERUN - Follitropin subunit beta OS=Meriones unguiculatus GN=FSHB PE=2 SV=1	176.0	[0..1]	[129..1]
gi\|108743544 - gi\|108743544\|dbj\|BAE95635.1\| follicle stimulating hormone beta-subunit precursor protein [Microtus m...	175.0	[0..1]	[129..1]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVQFCFLF CCWKAVCCNS CELTNITIAV EKEECGFCIS INTTWCAGYC YTRDLVYKDP  60
   61 ARPNIQKTCT FKELVYETVK VPGCAHHADS LYTYPVATAC HCGKCNSDST DCTVRGLGPS 120
  121 YCSFGDMKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.221849
Match:	1xwdB
Description:	Crystal Structure of Human Follicle Stimulating Hormone Complexed with its Receptor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits