YRC Public Data Repository - Protein Structure Prediction

Protein:	FRAT1_MOUSE
Organism:	Mus musculus
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRAT1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109458852, gi... - gi\|109462078\|ref\|XP_001057369.1\| PREDICTED: similar to GSK-3 binding protein FRAT1 [Rattus norvegicu...	372.0	[0..1]	[274..1]
gi\|55634427 - gi\|55634427\|ref\|XP_521571.1\| PREDICTED: GSK-3 binding protein FRAT1 [Pan troglodytes]	332.0	[0..1]	[274..1]
gi\|4762025 - gi\|4762025\|gb\|AAB97096.2\| proto-oncogene [Homo sapiens]	332.0	[0..1]	[274..1]
gi\|60654377 - gi\|60654377\|gb\|AAX29879.1\| frequently rearranged in advanced T-cell lymphomas [synthetic construct]	329.0	[0..1]	[274..1]
gi\|109090121 - gi\|109090121\|ref\|XP_001101995.1\| PREDICTED: similar to GSK-3 binding protein FRAT1 [Macaca mulatta]	324.0	[0..1]	[274..1]
gi\|5326868, gi\|1... - gi\|7305067\|ref\|NP_038816.1\| paternally expressed 12 [Mus musculus], gi\|5326868\|gb\|AAD42076.1\|AF14885...	318.0	[0..1]	[270..1]
gi\|76681648 - gi\|76681648\|ref\|XP_581986.2\| PREDICTED: similar to GSK-3 binding protein FRAT1, partial [Bos taurus]	308.0	[0..1]	[274..79]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPCRREEEEE AGDEAEGEED DDSFLLLQQS VTLGGSTDVD QLIVQIGETL QLDAAHDRPA  60
   61 SPCAAPGPPP PQVLAALPAD KTGTPARRLL RPTGSAETGN PAPPGAVRCV LGERGRVRGR 120
  121 SAPYCVAEIS P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GASALPQQPG LDGPPGTGKL STPQPLSGPC RRGWLRNAAA SRRLQQRRGS QPETRTGDDD  60
   61 DPHRLLQQLV LSGNLIKEAV RRLHSRQLQL HAKLPAHPFL GPLSAPVHEP PSPGSPRAAC 120
  121 SDPGAFMGRA QLRTGDDLLV PGS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits