YRC Public Data Repository - Protein Structure Prediction

Protein:	FRE_ECOLI
Organism:	Escherichia coli
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRE_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|535285, gi\|628588 - pir\|\|S47292 phenol 2-monooxygenase (EC 1.14.13.7) chain mopP - Acinetobacter calcoaceticus, gi\|53528...	223.0	[0..3]	[229..105]
gi\|2605613 - gi\|2605613\|dbj\|BAA23335.1\| DMS oxygenase component [Acinetobacter sp.]	223.0	[0..3]	[229..105]
gi\|74058076, gi\|... - gi\|74318581\|ref\|YP_316321.1\| CDP-6-deoxy-delta-3,4-glucoseen reductase [Thiobacillus denitrificans A...	222.0	[0..2]	[231..102]
gi\|67084888, gi\|... - gi\|67158154\|ref\|ZP_00419204.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi... gi\|67158154, gi\|... - gi\|67158154\|ref\|ZP_00419204.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi...	220.0	[0..3]	[229..103]
gi\|90331996, gi\|... - gi\|90416271\|ref\|ZP_01224203.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:OxidoreductaseFAD-bindin... gi\|90416271\|ref\|... - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:OxidoreductaseFAD-binding region [marine gamma proteoba...	220.0	[0..3]	[229..105]
gi\|254251643, gi... - gi\|84362620\|ref\|ZP_00987237.1\| COG0543: 2-polyprenylphenol hydroxylase and related flavodoxin oxidor...	219.0	[0..3]	[230..103]
gi\|34499239, gi\|... - gi\|34499239\|ref\|NP_903454.1\| CDP-6-deoxy-delta-3,4-glucoseen reductase [Chromobacterium violaceum AT...	218.0	[0..2]	[229..102]
gi\|194558433, gi... - gi\|84355476\|ref\|ZP_00980359.1\| COG0543: 2-polyprenylphenol hydroxylase and related flavodoxin oxidor... gi\|67667160, gi\|... - gi\|67667160\|ref\|ZP_00464391.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi... gi\|67093131, gi\|... - gi\|67659255\|ref\|ZP_00456619.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi... gi\|170733851, gi... - gi\|170733851\|ref\|YP_001765798.1\| CDP-6-deoxy-delta-3,4-glucoseen reductase [Burkholderia cenocepacia...	217.0	[0..3]	[230..103]
gi\|53729374, gi\|... - gi\|71909404\|ref\|YP_286991.1\| ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding...	217.0	[0..3]	[229..105]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTLSCKVTSV EAITDTVYRV RIVPDAAFSF RAGQYLMVVM DERDKRPFSM ASTPDEKGFI  60
   61 ELHIGASEIN LYAKAVMDRI LKDHQIVVDI PHGEAWLRDD EERPMILIAG GTGFSYARSI 120
  121 LLTALARNPN RDITIYWGGR EEQHLYDLCE LEALSLKHPG LQVVPVVEQP EAGWRGRTGT 180
  181 VLTAVLQDHG TLAEHDIYIA GRFEMAKIAR DLFCSERNAR EDRLFGDAFA FI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	1qfjA
Description:	NAD(P)H:flavin oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.82418089257266	bayes_pls_golite062009
oxidoreductase activity	1.06930052685144	bayes_pls_golite062009
transferase activity	0.20565726169867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: