YRC Public Data Repository - Protein Structure Prediction

Protein:	FRDD_ECOLI
Organism:	Escherichia coli
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRDD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|26111479, gi\|... - gi\|26251047\|ref\|NP_757087.1\| fumarate reductase subunit D [Escherichia coli CFT073], gi\|26111479\|gb\|...	177.0	[0..1]	[119..11]
FRDD_SHISS - Fumarate reductase subunit D OS=Shigella sonnei (strain Ss046) GN=frdD PE=3 SV=1 FRDD_SHIBS - Fumarate reductase subunit D OS=Shigella boydii serotype 4 (strain Sb227) GN=frdD PE=3 SV=1 FRDD_ECOSE - Fumarate reductase subunit D OS=Escherichia coli (strain SE11) GN=frdD PE=3 SV=1 FRDD_ECO24 - Fumarate reductase subunit D OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frdD PE=3 SV=1 FRDD_ECOHS - Fumarate reductase subunit D OS=Escherichia coli O9:H4 (strain HS) GN=frdD PE=3 SV=1 FRDD_ECO8A - Fumarate reductase subunit D OS=Escherichia coli O8 (strain IAI1) GN=frdD PE=3 SV=1 FRDD_ECO55 - Fumarate reductase subunit D OS=Escherichia coli (strain 55989 / EAEC) GN=frdD PE=3 SV=1 gi\|193067926, gi... - gi\|75238679\|ref\|ZP_00722668.1\| COG3080: Fumarate reductase subunit D [Escherichia coli E110019], gi\|... gi\|75256208, gi\|... - gi\|75256208\|ref\|ZP_00727896.1\| COG3080: Fumarate reductase subunit D [Escherichia coli E22], gi\|1930... gi\|194412994, gi... - gi\|75209852\|ref\|ZP_00710050.1\| COG3080: Fumarate reductase subunit D [Escherichia coli B171], gi\|194... gi\|190904343, gi... - gi\|75231252\|ref\|ZP_00717659.1\| COG3080: Fumarate reductase subunit D [Escherichia coli B7A], gi\|1911...	171.0	[0..1]	[119..1]
FRDD_ECOL6 - Fumarate reductase subunit D OS=Escherichia coli O6 GN=frdD PE=3 SV=2 FRDD_ECOL6 - Fumarate reductase subunit D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frdD ...	170.0	[0..1]	[119..1]
gi\|33358375 - gi\|33358375\|gb\|AAQ16662.1\| FrdD [Escherichia coli]	168.0	[0..1]	[119..1]
gi\|38488393 - gi\|38488393\|emb\|CAE55178.1\| fumarate reductase subunit D [Citrobacter murliniae]	168.0	[0..1]	[119..1]
FRDD_SHIB3 - Fumarate reductase subunit D OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=frdD PE=...	168.0	[0..1]	[119..1]
gi\|84378247, gi\|... - gi\|84386957\|ref\|ZP_00989981.1\| fumarate reductase subunit D [Vibrio splendidus 12B01], gi\|84378247\|g...	166.0	[0..2]	[119..16]
FRDD_SALA4 - Fumarate reductase subunit D OS=Salmonella agona (strain SL483) GN=frdD PE=3 SV=1 gi\|197263223, gi... - gi\|197263223\|ref\|ZP_03163297.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... gi\|238912805 - gi\|238912805\|ref\|ZP_04656642.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... FRDD_SALDC - Fumarate reductase subunit D OS=Salmonella dublin (strain CT_02021853) GN=frdD PE=3 SV=1 gi\|199604729, gi... - gi\|200387631\|ref\|ZP_03214243.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... FRDD_SALNS - Fumarate reductase subunit D OS=Salmonella newport (strain SL254) GN=frdD PE=3 SV=1 FRDD_SALHS - Fumarate reductase subunit D OS=Salmonella heidelberg (strain SL476) GN=frdD PE=3 SV=1 gi\|194455275, gi... - gi\|194468911\|ref\|ZP_03074895.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... FRDD_SALSV - Fumarate reductase subunit D OS=Salmonella schwarzengrund (strain CVM19633) GN=frdD PE=3 SV=1 FRDD_SALPB - Fumarate reductase subunit D OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frdD PE=3 SV... gi\|168244880, gi... - gi\|205336304\|gb\|EDZ23068.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serova... gi\|168263306, gi... - gi\|205347940\|gb\|EDZ34571.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serova... gi\|195630536, gi... - gi\|195630536\|gb\|EDX49148.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serova... FRDD_SALAR - Fumarate reductase subunit D OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=f... gi\|168822530, gi... - gi\|205341053\|gb\|EDZ27817.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serova... FRDD_SALPB - Fumarate reductase subunit D OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frdD PE=3 SV... gi\|205322015, gi... - gi\|205322015\|gb\|EDZ09854.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serova... gi\|168231376, gi... - gi\|205334372\|gb\|EDZ21136.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serova... gi\|197289937, gi... - gi\|197289937\|gb\|EDY29296.1\| fumarate reductase subunit D (Fumarate reductase 13 kDa hydrophobicprote... FRDD_SALPC - Fumarate reductase subunit D OS=Salmonella paratyphi C (strain RKS4594) GN=frdD PE=3 SV=1 gi\|213428692 - gi\|213428692\|ref\|ZP_03361442.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... gi\|213585255 - gi\|213585255\|ref\|ZP_03367081.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... gi\|213646925 - gi\|213646925\|ref\|ZP_03376978.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... gi\|213852159 - gi\|213852159\|ref\|ZP_03381691.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... gi\|204323445, gi... - gi\|204926780\|ref\|ZP_03217982.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... FRDD_SALG2 - Fumarate reductase subunit D OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frdD PE=3 SV=1 FRDD_SALEP - Fumarate reductase subunit D OS=Salmonella enteritidis PT4 (strain P125109) GN=frdD PE=3 SV=1 gi\|213052298 - gi\|213052298\|ref\|ZP_03345176.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica se... FRDD_SALTI - Fumarate reductase subunit D OS=Salmonella typhi GN=frdD PE=3 SV=1 FRDD_SALTY - Fumarate reductase subunit D OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=frdD... FRDD_SALTI - Fumarate reductase subunit D OS=Salmonella typhi GN=frdD PE=3 SV=1 gi\|16763162 - gi\|16763162\|ref\|NP_458779.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serov... gi\|29140280, gi\|... - gi\|29144641\|ref\|NP_807983.1\| fumarate reductase subunit D [Salmonella enterica subsp. enterica serov... FRDD_SALTY - Fumarate reductase subunit D OS=Salmonella typhimurium GN=frdD PE=3 SV=1 FRDD_SALTY - Fumarate reductase subunit D OS=Salmonella typhimurium GN=frdD PE=3 SV=1	165.0	[0..1]	[119..1]
FRDD_SALPA - Fumarate reductase subunit D OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=frdD PE=3 SV=1 FRDD_SALPA - Fumarate reductase subunit D OS=Salmonella paratyphi A GN=frdD PE=3 SV=1 FRDD_SALPK - Fumarate reductase subunit D OS=Salmonella paratyphi A (strain AKU_12601) GN=frdD PE=3 SV=1	164.0	[0..1]	[119..1]
gi\|77977158, gi\|... - gi\|77977158\|ref\|ZP_00832615.1\| COG3080: Fumarate reductase subunit D [Yersinia intermedia ATCC 29909...	164.0	[0..2]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINPNPKRSD EPVFWGLFGA GGMWSAIIAP VMILLVGILL PLGLFPGDAL SYERVLAFAQ  60
   61 SFIGRVFLFL MIVLPLWCGL HRMHHAMHDL KIHVPAGKWV FYGLAAILTV VTLIGVVTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1kf6D
Description:	Fumarate reductase subunit FrdD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	3.77307162030081	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.15706429275351	bayes_pls_golite062009
oxidoreductase activity	2.006262138179	bayes_pls_golite062009
electron carrier activity	1.35460962236208	bayes_pls_golite062009
catalytic activity	1.34226547326392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: