YRC Public Data Repository - Protein Structure Prediction

Protein:	FRDC_PROVU
Organism:	Proteus vulgaris
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRDC_PROVU.

Description	E-value	Query Range	Subject Range
FRDC_ECOK1 - Fumarate reductase subunit C OS=Escherichia coli O1:K1 / APEC GN=frdC PE=3 SV=1 gi\|124531204, gi... - gi\|124531204\|ref\|ZP_01701549.1\| fumarate reductase, subunit C [Escherichia coli B], gi\|124498723\|gb\|... FRDC_ECOLC - Fumarate reductase subunit C OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frdC PE=3... FRDC_ECOL6 - Fumarate reductase subunit C OS=Escherichia coli O6 GN=frdC PE=3 SV=1 EG10332 - fumarate reductase (anaerobic), membrane anchor subunit / Fumarate reductase membrane anchor polypep... FRDC_ECOUT - Fumarate reductase subunit C OS=Escherichia coli (strain UTI89 / UPEC) GN=frdC PE=3 SV=1 gi\|15834387, gi\|... - gi\|15834387\|ref\|NP_313160.1\| fumarate reductase subunit C [Escherichia coli O157:H7 str. Sakai], gi\|... FRDC_ECOL5 - Fumarate reductase subunit C OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frdC PE=3 SV=1 FRDC_SHIF8 - Fumarate reductase subunit C OS=Shigella flexneri serotype 5b (strain 8401) GN=frdC PE=3 SV=1 sp\|B7UPX4\|FRDC_ECO27 - Fumarate reductase subunit C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frdC PE=3 SV=1 FRDC_ECOL6 - Fumarate reductase subunit C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frdC ... FRDC_ECO57 - Fumarate reductase subunit C OS=Escherichia coli O157:H7 GN=frdC PE=3 SV=1 EG10332 - fumarate reductase (anaerobic), membrane anchor subunit / Fumarate reductase membrane anchor polypep... gi\|15804746, gi\|... - gi\|15804746\|ref\|NP_290787.1\| fumarate reductase subunit C [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|75238680, gi\|... - gi\|75238680\|ref\|ZP_00722669.1\| COG3029: Fumarate reductase subunit C [Escherichia coli E110019], gi\|... gi\|190906368, gi... - gi\|75239121\|ref\|ZP_00723101.1\| COG3029: Fumarate reductase subunit C [Escherichia coli F11], gi\|1911... gi\|188017465, gi... - gi\|188017465\|gb\|EDU55587.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... gi\|75209853, gi\|... - gi\|75209853\|ref\|ZP_00710051.1\| COG3029: Fumarate reductase subunit C [Escherichia coli B171], gi\|194... gi\|168755342, gi... - gi\|189357504\|gb\|EDU75923.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... gi\|191165653, gi... - gi\|75231251\|ref\|ZP_00717658.1\| COG3029: Fumarate reductase subunit C [Escherichia coli B7A], gi\|1911... gi\|189368641, gi... - gi\|189368641\|gb\|EDU87057.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... FRDC_SHISS - Fumarate reductase subunit C OS=Shigella sonnei (strain Ss046) GN=frdC PE=3 SV=1 gi\|168766432, gi... - gi\|189364102\|gb\|EDU82521.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... gi\|89110875, gi\|... - gi\|89110875\|ref\|AP_004655.1\| fumarate reductase (anaerobic), membrane anchor subunit [Escherichia co... gi\|187769838, gi... - gi\|187769838\|gb\|EDU33682.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... gi\|193065726, gi... - gi\|75256209\|ref\|ZP_00727897.1\| COG3029: Fumarate reductase subunit C [Escherichia coli E22], gi\|1930... gi\|189001750, gi... - gi\|189001750\|gb\|EDU70736.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... gi\|188487858, gi... - gi\|75514913\|ref\|ZP_00737142.1\| COG3029: Fumarate reductase subunit C [Escherichia coli 53638], gi\|18... gi\|168784790, gi... - gi\|189375056\|gb\|EDU93472.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... FRDC_ECOLI - Fumarate reductase subunit C (Fumarate reductase 15 kDa hydrophobic protein) - Escherichia coli gi\|237703821, gi... - gi\|237703821\|ref\|ZP_04534302.1\| fumarate reductase subunit C [Escherichia sp. 3_2_53FAA], gi\|2269017... FRDC_ECOBW - Fumarate reductase subunit C OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=frdC PE=3 SV=1 gi\|251787407, gi... - gi\|251787407\|ref\|YP_003001711.1\| hypothetical protein B21_03986 [Escherichia coli BL21], gi\|24237968... FRDC_ECO24 - Fumarate reductase subunit C OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frdC PE=3 SV=1 gi\|253980143, gi... - gi\|254290836\|ref\|YP_003056584.1\| fumarate reductase subunit C [Escherichia coli BL21(DE3)], gi\|25398... FRDC_ECOHS - Fumarate reductase subunit C OS=Escherichia coli O9:H4 (strain HS) GN=frdC PE=3 SV=1 gi\|226840274, gi... - gi\|254037168\|ref\|ZP_04871245.1\| fumarate reductase subunit C [Escherichia sp. 1_1_43], gi\|226840274\|... gi\|194423847, gi... - gi\|83587275\|ref\|ZP_00925904.1\| COG3029: Fumarate reductase subunit C [Escherichia coli 101-1], gi\|19... gi\|253975987, gi... - gi\|254164086\|ref\|YP_003047194.1\| fumarate reductase subunit C [Escherichia coli B str. REL606], gi\|2... FRDC_SHIB3 - Fumarate reductase subunit C OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=frdC PE=... gi\|254796176, gi... - gi\|254796176\|ref\|YP_003081013.1\| fumarate reductase (anaerobic), membrane anchor subunit [Escherichi... FRDC_ECOSE - Fumarate reductase subunit C OS=Escherichia coli (strain SE11) GN=frdC PE=3 SV=1 FRDC_ECO27 - Fumarate reductase subunit C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=frdC PE=3 SV=1 gi\|217322793, gi... - gi\|217326572\|ref\|ZP_03442656.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 s... FRDC_ESCF3 - Fumarate reductase subunit C OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)... FRDC_ECO8A - Fumarate reductase subunit C OS=Escherichia coli O8 (strain IAI1) GN=frdC PE=3 SV=1 FRDC_ECO45 - Fumarate reductase subunit C OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=frdC PE=3 SV=1 FRDC_ECO55 - Fumarate reductase subunit C OS=Escherichia coli (strain 55989 / EAEC) GN=frdC PE=3 SV=1 FRDC_ECO7I - Fumarate reductase subunit C OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=frdC PE=3 SV=1 gi\|189375640, gi... - gi\|189375640\|gb\|EDU94056.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 str. ... FRDC_ECODH - Fumarate reductase subunit C OS=Escherichia coli (strain K12 / DH10B) GN=frdC PE=3 SV=1 FRDC_ECOSM - Fumarate reductase subunit C OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frdC PE=3 SV=1 gi\|195935946 - gi\|195935946\|ref\|ZP_03081328.1\| fumarate reductase subunit C [Escherichia coli O157:H7 str. EC4024] gi\|208725583, gi... - gi\|208805782\|ref\|ZP_03248119.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 s... gi\|208813429, gi... - gi\|208813429\|ref\|ZP_03254758.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 s... gi\|208818295, gi... - gi\|208818295\|ref\|ZP_03258615.1\| fumarate reductase, cytochrome b subunit [Escherichia coli O157:H7 s... FRDC_ECO5E - Fumarate reductase subunit C OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=frdC PE=3 SV=1	194.0	[0..1]	[129..1]
FRDC_SHIBS - Fumarate reductase subunit C OS=Shigella boydii serotype 4 (strain Sb227) GN=frdC PE=3 SV=1	193.0	[0..1]	[129..1]
FRDC_SHIDS - Fumarate reductase subunit C OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=frdC PE=3 SV=1	192.0	[0..1]	[129..1]
gi\|171849106, gi... - gi\|90108812\|pdb\|2B76\|O Chain O, E. Coli Quinol Fumarate Reductase Frda E49q Mutation, gi\|90108808\|pd...	192.0	[0..2]	[129..1]
gi\|24054836, gi\|... - gi\|24115511\|ref\|NP_710021.1\| fumarate reductase subunit C [Shigella flexneri 2a str. 301], gi\|240548... FRDC_SHIFL - Fumarate reductase subunit C OS=Shigella flexneri GN=frdC PE=3 SV=1 gi\|30043793, gi\|... - gi\|30065529\|ref\|NP_839700.1\| fumarate reductase subunit C [Shigella flexneri 2a str. 2457T], gi\|3004...	189.0	[0..1]	[129..1]
FRDC_PHOPR - Fumarate reductase subunit C OS=Photobacterium profundum GN=frdC PE=3 SV=1 FRDC_PHOPR - Fumarate reductase subunit C OS=Photobacterium profundum (strain SS9) GN=frdC PE=3 SV=1	185.0	[0..3]	[128..2]
gi\|77977159, gi\|... - gi\|77977159\|ref\|ZP_00832616.1\| COG3029: Fumarate reductase subunit C [Yersinia intermedia ATCC 29909...	184.0	[0..1]	[130..1]
gi\|75854925, gi\|... - gi\|75854925\|ref\|ZP_00762593.1\| COG3029: Fumarate reductase subunit C [Vibrio sp. Ex25], gi\|116184306...	184.0	[0..3]	[128..2]
gi\|90581263, gi\|... - gi\|90581263\|ref\|ZP_01237060.1\| fumarate reductase subunit C [Vibrio angustum S14], gi\|90437502\|gb\|EA...	184.0	[0..3]	[128..2]
FRDC_YERPG - Fumarate reductase subunit C OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frdC PE=3 SV=1	183.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKRKPYVR GMQPNWWTKL GFYRFYITRE GTCLPQLWFS LVVLFGVFAL KNGPESWAGF  60
   61 VGFLSNPILM LINIVTLIAT VFHTATWFKL APKAVNIVVK DEKLPQEPIV RGLWGLTIVV 120
  121 TVVILAVALI V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1kf6C
Description:	Fumarate reductase subunit FrdC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	3.77307162030081	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	2.15706429275351	bayes_pls_golite062009
oxidoreductase activity	2.006262138179	bayes_pls_golite062009
electron carrier activity	1.35460962236208	bayes_pls_golite062009
catalytic activity	1.34226547326392	bayes_pls_golite062009
binding	0.407887533459531	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: