YRC Public Data Repository - Protein Structure Prediction

Protein:	FM1A_ECOLI, FIMA...
Organism:	Escherichia coli
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FM1A_ECOLI, FIMA....

Description	E-value	Query Range	Subject Range
gi\|16132136, gi\|... - gb\|AAC77271.1\| fimbrial protein; fimbrial protein, internal segment [Escherichia coli K12], gi\|1613... gi\|537156\|gb\|AAA... - fimI [Escherichia coli] gi\|537156, gi\|13... - gi\|537156\|gb\|AAA97211.1\| fimI [Escherichia coli], pir\|\|S56540 fimI protein - Escherichia coli (strai...	148.0	[0..1]	[182..37]
gi\|117626623, gi... - gi\|117626623\|ref\|YP_859946.1\| FimI fimbrial protein [Escherichia coli APEC O1], gi\|115515747\|gb\|ABJ0...	148.0	[0..1]	[182..42]
gi\|82546662, gi\|... - gi\|82546662\|ref\|YP_410609.1\| fimbrial protein [Shigella boydii Sb227], gi\|81248073\|gb\|ABB68781.1\| fi...	147.0	[0..1]	[182..34]
gi\|91213960, gi\|... - gi\|91213960\|ref\|YP_543946.1\| FimI fimbrial protein [Escherichia coli UTI89], gi\|91075534\|gb\|ABE10415...	147.0	[0..1]	[182..37]
gi\|110644757, gi... - gi\|110644757\|ref\|YP_672487.1\| fimbrin-like protein fimI precursor [Escherichia coli 536], gi\|1103463...	146.0	[0..1]	[182..34]
gi\|209749352, gi... - pir\|\|B91288 fimbrial protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952),... gi\|15834528, gi\|... - gi\|15834528\|ref\|NP_313301.1\| FimI [Escherichia coli O157:H7], gi\|13364752\|dbj\|BAB38697.1\| fimbrial p... gi\|15834528, gi\|... - gi\|15834528\|ref\|NP_313301.1\| FimI [Escherichia coli O157:H7 str. Sakai], gi\|13364752\|dbj\|BAB38697.1\|...	146.0	[0..1]	[182..37]
gi\|15804890, gi\|... - gi\|15804890\|ref\|NP_290931.1\| fimbrial protein [Escherichia coli O157:H7 EDL933], gi\|12519322\|gb\|AAG5... gi\|25299237 - pir\|\|E86129 fimbrial protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933)	146.0	[0..1]	[182..37]
gi\|30065430, gi\|... - gi\|30065430\|ref\|NP_839601.1\| fimbrial protein [Shigella flexneri 2a str. 2457T], gi\|30043692\|gb\|AAP1... gi\|56384094, gi\|... - gi\|56480543\|ref\|NP_709920.2\| fimbrial protein [Shigella flexneri 2a str. 301], gi\|56384094\|gb\|AAN456...	145.0	[0..1]	[182..34]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKTLAIVV LSALSLSSTA ALAAATTVNG GTVHFKGEVV NAACAVDAGS VDQTVQLGQV  60
   61 RTASLAQEGA TSSAVGFNIQ LNDCDTNVAS KAAVAFLGTA IDAGHTNVLA LQSSAAGSAT 120
  121 NVGVQILDRT GAALTLDGAT FSSETTLNNG TNTIPFQARY FATGAATPGA ANADATFKVQ 180
  181 YQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits