YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIT_ECOLI
Organism:	Escherichia coli
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIT_ECOLI.

Description	E-value	Query Range	Subject Range
FLIT_SHISS - Flagellar protein FliT OS=Shigella sonnei (strain Ss046) GN=fliT PE=3 SV=1	137.0	[0..1]	[121..1]
FLIT_ECOK1 - Flagellar protein FliT OS=Escherichia coli O1:K1 / APEC GN=fliT PE=3 SV=1 gi\|237705883, gi... - gi\|237705883\|ref\|ZP_04536364.1\| flagellar protein fliT [Escherichia sp. 3_2_53FAA], gi\|226900640\|gb\|... gi\|227837220, gi... - gi\|227885647\|ref\|ZP_04003452.1\| flagellar biosynthesis protein FliT [Escherichia coli 83972], gi\|227... sp\|B7USU5\|FLIT_ECO27 - Flagellar protein FliT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fliT PE=3 SV=1 FLIT_ECOL6 - Flagellar protein FliT OS=Escherichia coli O6 GN=fliT PE=3 SV=1 FLIT_SHIFL - Flagellar protein FliT OS=Shigella flexneri GN=fliT PE=3 SV=1 FLIT_SHIF8 - Flagellar protein FliT OS=Shigella flexneri serotype 5b (strain 8401) GN=fliT PE=3 SV=1 FLIT_ECOUT - Flagellar protein FliT OS=Escherichia coli (strain UTI89 / UPEC) GN=fliT PE=3 SV=1 FLIT_ECOL6 - Flagellar protein FliT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fliT PE=3 S... gi\|30041620, gi\|... - gi\|30063368\|ref\|NP_837539.1\| flagellar biosynthesis protein FliT [Shigella flexneri 2a str. 2457T], ... FLIT_ECO45 - Flagellar protein FliT OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fliT PE=3 SV=1 gi\|24052311, gi\|... - gi\|24113302\|ref\|NP_707812.1\| flagellar biosynthesis protein FliT [Shigella flexneri 2a str. 301], gi... FLIT_ECO27 - Flagellar protein FliT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fliT PE=3 SV=1	137.0	[0..1]	[121..1]
FLIT_ECOHS - Flagellar protein FliT OS=Escherichia coli O9:H4 (strain HS) GN=fliT PE=3 SV=1 FLIT_ECO7I - Flagellar protein FliT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fliT PE=3 SV=1	136.0	[0..1]	[121..1]
gi\|193071136, gi... - gi\|75233948\|ref\|ZP_00718401.1\| hypothetical protein EcolE1_01004070 [Escherichia coli E110019], gi\|1...	136.0	[0..1]	[121..1]
FLIT_ECO24 - Flagellar protein FliT OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fliT PE=3 SV=1	136.0	[0..1]	[121..1]
FLIT_ECO8A - Flagellar protein FliT OS=Escherichia coli O8 (strain IAI1) GN=fliT PE=3 SV=1 gi\|75255525, gi\|... - gi\|75255525\|ref\|ZP_00727317.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli E22]... gi\|194429947, gi... - gi\|75208826\|ref\|ZP_00709110.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli B171... gi\|194439568, gi... - gi\|83585036\|ref\|ZP_00923690.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli 101-...	135.0	[0..1]	[120..1]
gi\|75511452, gi\|... - gi\|75511452\|ref\|ZP_00734127.1\| hypothetical protein Ecol5_01004270 [Escherichia coli 53638], gi\|1884...	135.0	[0..1]	[121..1]
gi\|75228514, gi\|... - gi\|75228514\|ref\|ZP_00715151.1\| COG0419: ATPase involved in DNA repair [Escherichia coli B7A], gi\|191... gi\|209919348, gi... - gi\|209919348\|ref\|YP_002293432.1\| flagellar biosynthesis protein FliT [Escherichia coli SE11], gi\|209...	134.0	[0..1]	[121..1]
FLIT_ECOL5 - Flagellar protein FliT OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fliT PE=3 SV=1 gi\|191173278, gi... - gi\|75239176\|ref\|ZP_00723153.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli F11]...	134.0	[0..1]	[121..1]
gi\|238723586, gi... - gi\|77975699\|ref\|ZP_00831233.1\| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV...	129.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHAPHLYFA WQQLVEKSQL MLRLATEEQW DELIASEMAY VNAVQEIAHL TEEVDPSTTM  60
   61 QEQLRPMLRL ILDNESKVKQ LLQIRMDELA KLVGQSSVQK SVLSAYGDQG GFVLAPQDNL 120
  121 F

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.522879
Match:	PF05400.4
Description:	No description for PF05400.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.950	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.941	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.941	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.928	N/A	N/A	a.24.18	Description not found.
View	Download	0.926	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.926	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.925	N/A	N/A	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.925	N/A	N/A	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.913	N/A	N/A	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.902	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits