YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIS_ECOLI
Organism:	Escherichia coli
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77961125 - gi\|77961125\|ref\|ZP_00824971.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia mollaretii ATCC ...	168.0	[0..1]	[127..1]
gi\|77957934 - gi\|77957934\|ref\|ZP_00821977.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia bercovieri ATCC ...	168.0	[0..1]	[127..1]
gi\|77975698 - gi\|77975698\|ref\|ZP_00831232.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia frederiksenii AT...	167.0	[0..1]	[127..1]
FLIS_SALTY - Flagellar protein fliS OS=Salmonella typhimurium GN=fliS PE=1 SV=1 FLIS_SALTY - Flagellar protein FliS OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliS PE=1 ... gi\|197288027, gi... - gi\|197288027\|gb\|EDY27414.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Schw... gi\|167993534, gi... - gi\|205328370\|gb\|EDZ15134.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar 4,[5... gi\|205322665, gi... - gi\|205322665\|gb\|EDZ10504.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Sain... gi\|161362836, gi... - gi\|161613472\|ref\|YP_001587437.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|168823003, gi... - gi\|205340686\|gb\|EDZ27450.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Welt... gi\|168462499, gi... - gi\|195633976\|gb\|EDX52328.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Newp... gi\|205351261, gi... - gi\|205351261\|gb\|EDZ37892.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Hada... gi\|205336358, gi... - gi\|205336358\|gb\|EDZ23122.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Heid... lcl\|NC_016856.1_... - [gene=fliS] [protein=flagellar protein FliS] [protein_id=YP_005237930.1] [location=2062225..2062632] FLIS_SALTY - Flagellar protein fliS OS=Salmonella typhimurium GN=fliS PE=1 SV=1 gi\|206708329, gi... - gi\|207856526\|ref\|YP_002243177.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|205352345, gi... - gi\|205352345\|ref\|YP_002226146.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|204931038, gi... - gi\|204931038\|ref\|ZP_03221864.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|194709582, gi... - gi\|194734080\|ref\|YP_002114994.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|194471520, gi... - gi\|194471520\|ref\|ZP_03077504.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|62128168, gi\|... - gi\|62180535\|ref\|YP_216952.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Cho... gi\|194409242, gi... - gi\|194450938\|ref\|YP_002046011.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|194401770, gi... - gi\|194443107\|ref\|YP_002041225.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|200389330, gi... - gi\|200389330\|ref\|ZP_03215941.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|197938576, gi... - gi\|198244060\|ref\|YP_002215126.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|197362052, gi... - gi\|197362052\|ref\|YP_002141689.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar... gi\|197242604, gi... - gi\|197264349\|ref\|ZP_03164423.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|56413126, gi\|... - gi\|56413126\|ref\|YP_150201.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Par... gi\|238912466 - gi\|238912466\|ref\|ZP_04656303.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ...	167.0	[0..1]	[130..1]
gi\|29141403, gi\|... - gi\|29141403\|ref\|NP_804745.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Typ... gi\|16760905 - gi\|16760905\|ref\|NP_456522.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar Typ... gi\|25303004, gi\|... - gi\|25303004\|pir\|\|AB0751 flagellar protein FliS [imported] - Salmonella enterica subsp. enterica sero... gi\|214001882 - gi\|214001882\|ref\|ZP_03412617.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213580924 - gi\|213580924\|ref\|ZP_03362750.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213426349 - gi\|213426349\|ref\|ZP_03359099.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213649070 - gi\|213649070\|ref\|ZP_03379123.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213613358 - gi\|213613358\|ref\|ZP_03371184.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ... gi\|213053504 - gi\|213053504\|ref\|ZP_03346382.1\| flagellar protein FliS [Salmonella enterica subsp. enterica serovar ...	167.0	[0..1]	[130..1]
gi\|77979910 - gi\|77979910\|ref\|ZP_00835326.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia intermedia ATCC ...	166.0	[0..1]	[127..1]
gi\|18642461 - gi\|18642461\|emb\|CAD22872.1\| FliS protein [Erwinia chrysanthemi]	164.0	[0..1]	[127..1]
Q66BQ9\|Q66BQ9_YERPS - Flagellar protein FliS - Yersinia pseudotuberculosis gi\|152959429, gi... - gi\|77628909\|ref\|ZP_00791495.1\| COG1516: Flagellin-specific chaperone FliS [Yersinia pseudotuberculos... gi\|169751142, gi... - gi\|170024608\|ref\|YP_001721113.1\| flagellar protein FliS [Yersinia pseudotuberculosis YPIII], gi\|1697... gi\|186698178, gi... - gi\|186895152\|ref\|YP_001872264.1\| flagellar protein FliS [Yersinia pseudotuberculosis PB1/+], gi\|1866... gi\|51596047, gi\|... - gi\|51596047\|ref\|YP_070238.1\| flagellar protein FliS [Yersinia pseudotuberculosis IP 32953], gi\|51589...	164.0	[0..1]	[127..1]
gi\|73532524 - gi\|73532524\|dbj\|BAE19820.1\| flagellar protein [Edwardsiella tarda]	162.0	[0..1]	[134..1]
gi\|49611188, gi\|... - gi\|50120662\|ref\|YP_049829.1\| flagellar protein FliS [Pectobacterium atrosepticum SCRI1043], gi\|49611...	162.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAAKGTQAY AQIGVESAVM SASQQQLVTM LFDGVLSALV RASLFMQDNN QQGKGVSLSK  60
   61 AINIIENGLR VSLDEESKDE LTQNLIALYS YMVRRLLQAN LRNDVSAVEE VEALMRNIAD 120
  121 AWKESLLSPS LIQDPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: