YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIO_ECOLI
Organism:	Escherichia coli
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIO_ECOLI.

Description	E-value	Query Range	Subject Range
FLIO_SALTY - Flagellar protein fliO OS=Salmonella typhimurium GN=fliO PE=1 SV=1 gi\|194712412, gi... - gi\|194736910\|ref\|YP_002115012.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... gi\|194457285, gi... - gi\|194470921\|ref\|ZP_03076905.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar ... gi\|194450292, gi... - gi\|194450292\|ref\|YP_002046029.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=fliO] [protein=flagellar biosynthesis protein FliO] [protein_id=YP_005237948.1] [location=2076... gi\|194445467, gi... - gi\|194445467\|ref\|YP_002041243.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... FLIO_SALTY - Flagellar protein fliO OS=Salmonella typhimurium GN=fliO PE=1 SV=1 gi\|197937789, gi... - gi\|198243273\|ref\|YP_002215108.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... gi\|197093512, gi... - gi\|197362035\|ref\|YP_002141672.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... gi\|197262300, gi... - gi\|197262300\|ref\|ZP_03162374.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar ... gi\|197247762, gi... - gi\|197247762\|ref\|YP_002146045.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar... gi\|168239218, gi... - gi\|197288079\|gb\|EDY27466.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Schw... gi\|205331851, gi... - gi\|205331851\|gb\|EDZ18615.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Kent... gi\|167993553, gi... - gi\|205328408\|gb\|EDZ15172.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar 4,[5... gi\|167552789, gi... - gi\|205322631\|gb\|EDZ10470.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Sain... gi\|168823021, gi... - gi\|205340681\|gb\|EDZ27445.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Welt... gi\|195634480, gi... - gi\|195634480\|gb\|EDX52832.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Newp... gi\|168259735, gi... - gi\|205351185\|gb\|EDZ37816.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Hada... gi\|168244829, gi... - gi\|205336353\|gb\|EDZ23117.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar Heid... gi\|213978533 - gi\|213978533\|ref\|ZP_03405792.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|213650744 - gi\|213650744\|ref\|ZP_03380797.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|56413109, gi\|... - gi\|56413109\|ref\|YP_150184.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... FLIO_SALTI - Flagellar protein FliO OS=Salmonella typhi GN=fliO PE=3 SV=1 gi\|213023113 - gi\|213023113\|ref\|ZP_03337560.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... FLIO_SALTY - Flagellar protein FliO OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fliO PE=1 ... gi\|206708312, gi... - gi\|207856509\|ref\|YP_002243160.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... gi\|205272109, gi... - gi\|205352328\|ref\|YP_002226129.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ent... FLIO_SALTI - Flagellar protein fliO OS=Salmonella typhi GN=fliO PE=3 SV=1 gi\|199602834, gi... - gi\|200390389\|ref\|ZP_03217000.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar ... gi\|213616271 - gi\|213616271\|ref\|ZP_03372097.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|213584778 - gi\|213584778\|ref\|ZP_03366604.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|29137013, gi\|... - gi\|29141386\|ref\|NP_804728.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|213424996 - gi\|213424996\|ref\|ZP_03357746.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente... gi\|16760922 - gi\|16760922\|ref\|NP_456539.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|213163377 - gi\|213163377\|ref\|ZP_03349087.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. ente...	120.0	[0..1]	[121..2]
gi\|62128186, gi\|... - gi\|62180553\|ref\|YP_216970.1\| flagellar biosynthesis protein FliO [Salmonella enterica subsp. enteric... gi\|224583523, gi... - gi\|224583523\|ref\|YP_002637321.1\| flagellar protein FliO [Salmonella enterica subsp. enterica serovar...	119.0	[0..1]	[121..2]
MOPB_PECCC - Protein MopB OS=Pectobacterium carotovorum subsp. carotovorum GN=mopB PE=3 SV=1 gi\|479743 - pir\|\|S35275 probable flagellar biosynthesis protein mopB - Erwinia carotovora subsp. atroseptica MOPB_ERWCA - (P34199) Protein mopB	112.0	[0..1]	[121..12]
gi\|50120650, gi\|... - gi\|50120650\|ref\|YP_049817.1\| flagellar protein [Pectobacterium atrosepticum SCRI1043], gi\|49611176\|e...	112.0	[0..1]	[121..12]
gi\|30138364, gi\|... - gi\|30248478\|ref\|NP_840548.1\| mopB flagellar biosynthesis [Nitrosomonas europaea ATCC 19718], gi\|3013...	110.0	[0..2]	[120..26]
gi\|34498583, gi\|... - gi\|34498583\|ref\|NP_902798.1\| flagellar protein FliO [Chromobacterium violaceum ATCC 12472], gi\|34104...	109.0	[0..7]	[120..17]
gi\|75856745, gi\|... - gi\|75856745\|ref\|ZP_00764368.1\| COG3190: Flagellar biogenesis protein [Vibrio sp. Ex25], gi\|116186001...	108.0	[0..4]	[120..21]
gi\|91223554, gi\|... - gi\|91223554\|ref\|ZP_01258819.1\| polar flagellar assembly protein FliO [Vibrio alginolyticus 12G01], g...	108.0	[0..4]	[120..21]
gi\|27365289, gi\|... - gi\|27365289\|ref\|NP_760817.1\| polar flagellar assembly protein [Vibrio vulnificus CMCP6], gi\|27361436... gi\|37199405, gi\|... - gi\|37680656\|ref\|NP_935265.1\| flagellar biogenesis protein FliO [Vibrio vulnificus YJ016], gi\|3719940...	108.0	[0..1]	[120..22]
gi\|153836940, gi... - gi\|153836940\|ref\|ZP_01989607.1\| polar flagellar assembly protein FliO [Vibrio parahaemolyticus AQ381... gi\|28899014, gi\|... - gi\|28899014\|ref\|NP_798619.1\| polar flagellar assembly protein FliO [Vibrio parahaemolyticus RIMD 221... gi\|28807233, gi\|... - gi\|4322006\|gb\|AAD15909.1\| polar flagellar assembly protein FliO [Vibrio parahaemolyticus], gi\|288072...	107.0	[0..4]	[120..21]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNHATVQSS APVSAAPLLQ VSGALIAIIA LILAAAWLVK RLGFAPKRTG VNGLKISASA  60
   61 SLGARERVVV VDVEDARLVL GVTAGQINLL HKLPPSAPTE EIPQTDFQSV MKNLLKRSGR 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.744727
Match:	PF04347.4
Description:	No description for PF04347.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.652	0.361	flagellum organization	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.638	0.079	flagellum organization	d.129.3	Bet v1-like
View	Download	0.633	0.036	flagellum organization	a.29.2	Bromodomain
View	Download	0.564	0.013	flagellum organization	d.82.2	Frataxin-like
View	Download	0.577	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.171985464312963	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: