YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIJ_ECOLI
Organism:	Escherichia coli
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91689569, gi\|... - gi\|91785615\|ref\|YP_560821.1\| flagellar FliJ protein [Burkholderia xenovorans LB400], gi\|91689569\|gb\|...	94.0	[0..1]	[147..1]
gi\|50120655, gi\|... - gi\|50120655\|ref\|YP_049822.1\| flagellar biosynthesis chaperone [Pectobacterium atrosepticum SCRI1043]...	94.0	[0..1]	[147..1]
gi\|165925995, gi... - gi\|165925995\|ref\|ZP_02221827.1\| flagellar export protein FliJ [Yersinia pestis biovar Orientalis str... gi\|166010908, gi... - gi\|166010908\|ref\|ZP_02231806.1\| flagellar export protein FliJ [Yersinia pestis biovar Antiqua str. E... Q66BS1\|Q66BS1_YERPS - Flagellar protein FliJ - Yersinia pseudotuberculosis gi\|166210834, gi... - gi\|166210834\|ref\|ZP_02236869.1\| flagellar export protein FliJ [Yersinia pestis biovar Antiqua str. B... gi\|165938784, gi... - gi\|89105448\|ref\|ZP_01177967.1\| COG2882: Flagellar biosynthesis chaperone [Yersinia pestis biovar Ori... gi\|167049526, gi... - gi\|167401137\|ref\|ZP_02306640.1\| flagellar export protein FliJ [Yersinia pestis biovar Antiqua str. U... gi\|162420935, gi... - gi\|77635999\|ref\|ZP_00798077.1\| COG2882: Flagellar biosynthesis chaperone [Yersinia pestis Angola], g... gi\|108779111, gi... - gi\|108807198\|ref\|YP_651114.1\| flagellar biosynthesis chaperone [Yersinia pestis Antiqua], gi\|1087791... gi\|167420422, gi... - gi\|167420422\|ref\|ZP_02312175.1\| flagellar export protein FliJ [Yersinia pestis biovar Orientalis str... gi\|77628898, gi\|... - gi\|77628898\|ref\|ZP_00791484.1\| COG2882: Flagellar biosynthesis chaperone [Yersinia pseudotuberculosi... gi\|108776106, gi... - gi\|229902833\|ref\|ZP_04517950.1\| flagellar protein FliJ [Yersinia pestis Nepal516], gi\|229680280\|gb\|E... gi\|167425821, gi... - gi\|167425821\|ref\|ZP_02317574.1\| flagellar export protein FliJ [Yersinia pestis biovar Mediaevalis st... gi\|149366226, gi... - gi\|149366226\|ref\|ZP_01888261.1\| flagellar protein FliJ [Yersinia pestis CA88-4125], gi\|149292639\|gb\|... gi\|145210282, gi... - gi\|145598586\|ref\|YP_001162662.1\| flagellar biosynthesis chaperone [Yersinia pestis Pestoides F], gi\|... gi\|229896272, gi... - gi\|229896272\|ref\|ZP_04511442.1\| flagellar protein FliJ [Yersinia pestis Pestoides A], gi\|229701195\|g... gi\|25357434 - pir\|\|AH0222 flagellar protein FliJ [imported] - Yersinia pestis (strain CO92) gi\|167467517 - gi\|167467517\|ref\|ZP_02332221.1\| flagellar export protein FliJ [Yersinia pestis FV-1] gi\|229693546, gi... - gi\|229897209\|ref\|ZP_04512365.1\| flagellar protein FliJ [Yersinia pestis biovar Orientalis str. PEXU2... gi\|186698166, gi... - gi\|186895140\|ref\|YP_001872252.1\| flagellar biosynthesis chaperone [Yersinia pseudotuberculosis PB1/+... gi\|229897936, gi... - gi\|229897936\|ref\|ZP_04513087.1\| flagellar protein FliJ [Yersinia pestis biovar Orientalis str. India... gi\|45436244, gi\|... - gi\|45441384\|ref\|NP_992923.1\| flagellar biosynthesis chaperone [Yersinia pestis biovar Microtus str. ... gi\|22126363, gi\|... - gi\|22126363\|ref\|NP_669786.1\| flagellar biosynthesis chaperone [Yersinia pestis KIM], gi\|21959347\|gb\|... gi\|218928947, gi... - gi\|218928947\|ref\|YP_002346822.1\| flagellar biosynthesis chaperone [Yersinia pestis CO92], gi\|1612207... gi\|51596035, gi\|... - gi\|51596035\|ref\|YP_070226.1\| flagellar biosynthesis chaperone [Yersinia pseudotuberculosis IP 32953]...	93.0	[0..1]	[144..1]
gi\|78067886, gi\|... - gi\|78067886\|ref\|YP_370655.1\| flagellar biosynthesis chaperone FliJ-like protein [Burkholderia sp. 38...	92.0	[0..1]	[147..1]
gi\|238788329, gi... - gi\|77975710\|ref\|ZP_00831244.1\| COG2882: Flagellar biosynthesis chaperone [Yersinia frederiksenii ATC...	92.0	[0..1]	[144..1]
gi\|238798575, gi... - gi\|77961115\|ref\|ZP_00824961.1\| COG2882: Flagellar biosynthesis chaperone [Yersinia mollaretii ATCC 4...	92.0	[0..1]	[144..1]
gi\|77957923 - gi\|77957923\|ref\|ZP_00821966.1\| COG2882: Flagellar biosynthesis chaperone [Yersinia bercovieri ATCC 4...	91.0	[0..1]	[144..1]
gi\|68545845, gi\|... - gi\|68545845\|ref\|ZP_00585394.1\| flagellar protein FliJ [Shewanella amazonensis SB2B], gi\|68516205\|gb\|...	91.0	[0..1]	[146..1]
gi\|189375720, gi... - gi\|189375720\|gb\|EDU94136.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC508], gi\|1688022... gi\|170019725, gi... - gi\|170019725\|ref\|YP_001724679.1\| flagellar biosynthesis chaperone [Escherichia coli ATCC 8739], gi\|1... gi\|170518574, gi... - gi\|170680856\|ref\|YP_001743303.1\| flagellar protein FliJ [Escherichia coli SMS-3-5], gi\|170518574\|gb\|... gi\|195939248 - gi\|195939248\|ref\|ZP_03084630.1\| flagellar biosynthesis chaperone [Escherichia coli O157:H7 str. EC40... gi\|157067093, gi... - gi\|75195997\|ref\|ZP_00706067.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli HS], gi\|1... gi\|208810336, gi... - gi\|208810336\|ref\|ZP_03252212.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|194429927, gi... - gi\|75208815\|ref\|ZP_00709099.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli B171], gi... gi\|208816992, gi... - gi\|208816992\|ref\|ZP_03258112.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|83585023, gi\|... - gi\|83585023\|ref\|ZP_00923677.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli 101-1], g... gi\|208819228, gi... - gi\|208819228\|ref\|ZP_03259548.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|157154985, gi... - gi\|75190960\|ref\|ZP_00704227.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli E24377A],... gi\|209162246, gi... - gi\|209400846\|ref\|YP_002271058.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|188014177, gi... - gi\|188014177\|gb\|EDU52299.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4113], gi\|168751... gi\|189354915, gi... - gi\|189354915\|gb\|EDU73334.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4401], gi\|168758... gi\|168764432, gi... - gi\|189365547\|gb\|EDU83963.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4501], gi\|168764... gi\|168771549, gi... - gi\|189359715\|gb\|EDU78134.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4486], gi\|168771... gi\|187767407, gi... - gi\|187767407\|gb\|EDU31251.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4196], gi\|168777... gi\|188999306, gi... - gi\|188999306\|gb\|EDU68292.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC4076], gi\|168783... gi\|189370198, gi... - gi\|189370198\|gb\|EDU88614.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. EC869], gi\|1687902... gi\|209919364, gi... - gi\|209919364\|ref\|YP_002293448.1\| flagellar biosynthesis chaperone [Escherichia coli SE11], gi\|209912... gi\|215487142, gi... - gi\|215487142\|ref\|YP_002329573.1\| flagellar biosynthesis chaperone [Escherichia coli O127:H6 str. E23... gi\|217318349, gi... - gi\|217329002\|ref\|ZP_03445083.1\| flagellar protein FliJ [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|218689937, gi... - gi\|218689937\|ref\|YP_002398149.1\| flagellar biosynthesis chaperone [Escherichia coli ED1a], gi\|218427... gi\|218352279, gi... - gi\|218695547\|ref\|YP_002403214.1\| flagellar biosynthesis chaperone [Escherichia coli 55989], gi\|21835... gi\|209766852, gi... - pir\|\|A85812 flagellar fliJ protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|15831935, gi\|... - gi\|15831935\|ref\|NP_310708.1\| flagellar protein [Escherichia coli O157:H7], gi\|13362149\|dbj\|BAB36104.... gi\|26248211, gi\|... - gi\|26248211\|ref\|NP_754251.1\| flagellar biosynthesis chaperone [Escherichia coli CFT073], gi\|26108615... gi\|12516046, gi\|... - gi\|15802377\|ref\|NP_288403.1\| flagellar biosynthesis chaperone [Escherichia coli O157:H7 EDL933], gi\|... gi\|254793592, gi... - gi\|254793592\|ref\|YP_003078429.1\| flagellar protein [Escherichia coli O157:H7 str. TW14359], gi\|25459... gi\|124531431, gi... - gi\|124531431\|ref\|ZP_01701715.1\| flagellar export protein FliJ [Escherichia coli B], gi\|124498546\|gb\|... gi\|227885629, gi... - gi\|227885629\|ref\|ZP_04003434.1\| flagellar biosynthesis chaperone [Escherichia coli 83972], gi\|227837... gi\|75239164, gi\|... - gi\|75239164\|ref\|ZP_00723141.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli F11], gi\|... gi\|192925986, gi... - gi\|75255536\|ref\|ZP_00727328.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli E22], gi\|... gi\|191168306, gi... - gi\|75228502\|ref\|ZP_00715139.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli B7A], gi\|... gi\|192955536, gi... - gi\|75233937\|ref\|ZP_00718390.1\| COG2882: Flagellar biosynthesis chaperone [Escherichia coli E110019],... gi\|15831935, gi\|... - gi\|15831935\|ref\|NP_310708.1\| flagellar biosynthesis chaperone [Escherichia coli O157:H7 str. Sakai],... gi\|110343640, gi... - gi\|110642048\|ref\|YP_669778.1\| flagellar biosynthesis chaperone [Escherichia coli 536], gi\|110343640\|... gi\|73855959, gi\|... - gi\|74312482\|ref\|YP_310901.1\| flagellar biosynthesis chaperone [Shigella sonnei Ss046], gi\|73855959\|g...	90.0	[0..1]	[147..1]
gi\|187478206, gi... - gi\|187478206\|ref\|YP_786230.1\| flagellar protein [Bordetella avium 197N], gi\|115422792\|emb\|CAJ49320.1...	90.0	[0..2]	[146..2]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHGALATL KDLAEKEVED AARLLGEMRR GCQQAEEQLK MLIDYQNEYR NNLNSDMSAG  60
   61 ITSNRWINYQ QFIQTLEKAI TQHRQQLNQW TQKVDIALNS WREKKQRLQA WQTLQERQST 120
  121 AALLAENRLD QKKMDEFAQR AAMRKPE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.991
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits