YRC Public Data Repository - Protein Structure Prediction

Protein:	FLII_ECOLI
Organism:	Escherichia coli
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLII_ECOLI.

Description	E-value	Query Range	Subject Range
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1	541.0	[0..1]	[456..1]
gi\|61968281 - gi\|61968281\|gb\|AAX57067.1\| ATP synthase beta subunit [Petalodiscus fadenii]	536.0	[0..21]	[456..1]
gi\|15425560 - gi\|15425560\|emb\|CAC60400.1\| ATP synthase beta subunit [Brunonia australis]	535.0	[0..21]	[456..9]
gi\|5758870 - gi\|5758870\|gb\|AAD50844.1\| ATP synthase beta subunit [Cyanastrum cordifolium]	535.0	[0..1]	[456..1]
ATPB_IPOCC - ATP synthase subunit beta, chloroplastic OS=Ipomoea coccinea GN=atpB PE=3 SV=1	534.0	[0..1]	[456..1]
gi\|33318669 - gi\|33318669\|gb\|AAQ05218.1\| ATP synthase beta subunit [Podocarpus chinensis]	533.0	[0..25]	[456..2]
gi\|7708676 - gi\|7708676\|emb\|CAB90016.1\| ATP synthase beta subunit [Thunbergia coccinea]	533.0	[0..21]	[456..11]
gi\|86605139 - gi\|86605139\|ref\|YP_473902.1\| ATP synthase F1, beta subunit [Cyanobacteria bacterium Yellowstone A-Pr... ATPB_SYNJA - ATP synthase subunit beta OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpD PE=3 SV=1	531.0	[0..19]	[456..2]
gi\|22651724 - gi\|22651724\|gb\|AAM26934.1\| ATP synthase beta subunit [Aldrovanda vesiculosa]	529.0	[0..21]	[456..10]
gi\|22651730 - gi\|22651730\|gb\|AAM26937.1\| ATP synthase beta subunit [Drosera regia]	528.0	[0..22]	[456..12]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTRLTRWLT TLDNFEAKMA QLPAVRRYGR LTRATGLVLE ATGLQLPLGA TCVIERQNGS  60
   61 ETHEVESEVV GFNGQRLFLM PLEEVEGVLP GARVYAKNIS AEGLQSGKQL PLGPALLGRV 120
  121 LDGSGKPLDG LPSPDTTETG ALITPPFNPL QRTPIEHVLD TGVRPINALL TVGRGQRMGL 180
  181 FAGSGVGKSV LLGMMARYTR ADVIVVGLIG ERGREVKDFI ENILGAEGRA RSVVIAAPAD 240
  241 VSPLLRMQGA AYATRIAEDF RDRGQHVLLI MDSLTRYAMA QREIALAIGE PPATKGYPPS 300
  301 VFAKLPALVE RAGNGISGGG SITAFYTVLT EGDDQQDPIA DSARAILDGH IVLSRRLAEA 360
  361 GHYPAIDIEA SISRAMTALI SEQHYARVRT FKQLLSSFQR NRDLVSVGAY AKGSDPMLDK 420
  421 AIALWPQLEG YLQQGIFERA DWEASLQGLE RIFPTVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	2dpyA
Description:	No description for 2dpyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits