YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIF_ECOLI
Organism:	Escherichia coli
Length:	552 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIF_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|170019729, gi... - gi\|170019729\|ref\|YP_001724683.1\| flagellar MS-ring protein [Escherichia coli ATCC 8739], gi\|16975465... gi\|75511445, gi\|... - gi\|75511445\|ref\|ZP_00734120.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei... gi\|124531435, gi... - gi\|124531435\|ref\|ZP_01701719.1\| flagellar M-ring protein FliF [Escherichia coli B], gi\|124498550\|gb\|...	614.0	[0..1]	[552..1]
gi\|75190956, gi\|... - gi\|75190956\|ref\|ZP_00704223.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei...	613.0	[0..1]	[552..1]
gi\|1772459 - gi\|1772459\|dbj\|BAA14029.1\| FliF [Escherichia coli W3110] gi\|1772459 - gi\|1772459\|dbj\|BAA14029.1\| FliF [Escherichia coli]	613.0	[0..1]	[552..1]
gi\|194439576, gi... - gi\|83585027\|ref\|ZP_00923681.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei...	612.0	[0..1]	[552..1]
gi\|75255532, gi\|... - gi\|75255532\|ref\|ZP_00727324.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei... gi\|194429948, gi... - gi\|75208819\|ref\|ZP_00709103.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei...	612.0	[0..1]	[552..1]
gi\|74312478, gi\|... - gi\|74312478\|ref\|YP_310897.1\| flagellar MS-ring protein [Shigella sonnei Ss046], gi\|73855955\|gb\|AAZ88...	612.0	[0..1]	[552..1]
gi\|25304719, gi\|... - gi\|25304719\|pir\|\|AB0752 flagellar basal-body M-ring protein [imported] - Salmonella enterica subsp. ... gi\|16760913 - gi\|16760913\|ref\|NP_456530.1\| flagellar MS-ring protein [Salmonella enterica subsp. enterica serovar ...	612.0	[0..4]	[552..7]
gi\|190901660, gi... - gi\|75228506\|ref\|ZP_00715143.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei...	611.0	[0..1]	[552..1]
gi\|227885633, gi... - gi\|227885633\|ref\|ZP_04003438.1\| flagellar MS-ring protein [Escherichia coli 83972], gi\|227837206\|gb\|... gi\|26108610, gi\|... - gi\|26248206\|ref\|NP_754246.1\| flagellar MS-ring protein [Escherichia coli CFT073], gi\|26108610\|gb\|AAN...	611.0	[0..1]	[552..1]
gi\|218365564, gi... - gi\|218558795\|ref\|YP_002391708.1\| flagellar MS-ring protein [Escherichia coli S88], gi\|218365564\|emb\|... gi\|237705897, gi... - gi\|237705897\|ref\|ZP_04536378.1\| flagellar MS-ring protein [Escherichia sp. 3_2_53FAA], gi\|226900654\|... gi\|91211156, gi\|... - gi\|91211156\|ref\|YP_541142.1\| flagellar MS-ring protein [Escherichia coli UTI89], gi\|91072730\|gb\|ABE0... gi\|215265210, gi... - gi\|215487138\|ref\|YP_002329569.1\| flagellar MS-ring protein [Escherichia coli O127:H6 str. E2348/69],...	610.0	[0..1]	[552..1]

Back

Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATAAQTKS LEWLNRLRAN PKIPLIVAGS AAVAVMVALI LWAKAPDYRT LFSNLSDQDG  60
   61 GAIVSQLTQM NIPYRFSEAS GAIEVPADKV HELRLRLAQQ GLPKGGAVGF ELLDQEKFGI 120
  121 SQFSEQVNYQ RALEGELSRT IETIGPVKGA RVHLAMPKPS LFVREQKSPS ASVTVNLLPG 180
  181 RALDEGQISA IVHLVSSAVA GLPPGNVTLV DQGGHLLTQS NTSGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	1yj7A
Description:	Crystal structure of enteropathogenic E.coli (EPEC) type III secretion system protein EscJ
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [226-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLNDAQLKYA SDVEGRIQRR IEAILSPIVG NGNIHAQVTA QLDFASKEQT EEQYRPNGDE  60
   61 SHAALRSRQL NESEQSGSGY PGGVPGALSN QPAPANNAPI STPPANQNNR QQQASTTSNS 120
  121 GPRSTQRNET SNYEVDRTIR HTKMNVGDVQ RLSVAVVVNY KTLPDGKPLP LSNEQMKQIE 180
  181 DLTREAMGFS EKRGDSLNVV NSP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	86.39794
Match:	PF08345.2
Description:	No description for PF08345.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [429-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNSSDESGGE LPFWQQQAFI DQLLAAGRWL LVLLVAWLLW RKAVRPQLTR RAEAMKAVQQ  60
   61 QAQAREEVED AVEVRLSKDE QLQQRRANQR LGAEVMSQRI REMSDNDPRV VALVIRQWIN 120
  121 NDHE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits