YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIE_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIE_OCEIH.

Description	E-value	Query Range	Subject Range
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	104.0	[0..1]	[102..20]
gi\|153836964, gi... - gi\|153836964\|ref\|ZP_01989631.1\| flagellar hook-basal body complex protein (FliE) [Vibrio parahaemoly... gi\|28899024, gi\|... - gi\|28899024\|ref\|NP_798629.1\| flagellar hook-basal body protein FliE [Vibrio parahaemolyticus RIMD 22... gi\|28807243, gi\|... - gi\|7327275\|gb\|AAF59654.1\| FliE [Vibrio parahaemolyticus], gi\|28807243\|dbj\|BAC60513.1\| flagellar hook...	102.0	[0..1]	[102..1]
gi\|91191629, gi\|... - gi\|91223543\|ref\|ZP_01258808.1\| flagellar hook-basal body protein FliE [Vibrio alginolyticus 12G01], ...	102.0	[0..1]	[102..26]
gi\|221562890, gi... - gi\|222053601\|ref\|YP_002535963.1\| flagellar hook-basal body complex subunit FliE [Geobacter sp. FRC-3...	102.0	[0..1]	[102..1]
gi\|75856755, gi\|... - gi\|75856755\|ref\|ZP_00764378.1\| COG1677: Flagellar hook-basal body protein [Vibrio sp. Ex25], gi\|1161...	102.0	[0..1]	[102..26]
gi\|88934000, gi\|... - gi\|88934000\|ref\|ZP_01139644.1\| Flagellar hook-basal body complex protein FliE [Geobacter uraniumredu...	101.0	[0..1]	[102..1]
gi\|161486614 - gi\|161486614\|ref\|NP_935275.2\| flagellar hook-basal body protein FliE [Vibrio vulnificus YJ016] gi\|27365279, gi\|... - gi\|27365279\|ref\|NP_760807.1\| flagellar hook-basal body protein FliE [Vibrio vulnificus CMCP6], gi\|27...	100.0	[0..1]	[102..1]
gi\|39995517, gi\|... - gi\|39995517\|ref\|NP_951468.1\| flagellar hook-basal body complex protein FliE [Geobacter sulfurreducen...	100.0	[0..2]	[102..1]
FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima GN=fliE PE=3 SV=1	99.0	[0..12]	[102..4]
gi\|48847140, gi\|... - gi\|78224305\|ref\|YP_386052.1\| flagellar hook-basal body complex protein FliE [Geobacter metallireduce...	99.0	[0..2]	[102..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISIMGNNV TPIQPNESVN QVKRSPSEAQ ANFASTLKNA IEDLNHIQLE SDKKTEAFAS  60
   61 GKIDDLHDVM ITAQKSSVTL ETTVQVQKKV IDAYNEIMRM QV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.167491
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.998	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.969	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.968	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.967	N/A	N/A	a.29.11	Description not found.
View	Download	0.961	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.958	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.951	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.944	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.938	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.935	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits