YRC Public Data Repository - Protein Structure Prediction

Protein:	FLIE_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLIE_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|37199415, gi\|... - gi\|37680666\|ref\|NP_935275.1\| flagellar hook-basal body protein [Vibrio vulnificus YJ016], gi\|3719941...	99.0	[0..2]	[112..10]
gi\|75856755, gi\|... - gi\|75856755\|ref\|ZP_00764378.1\| COG1677: Flagellar hook-basal body protein [Vibrio sp. Ex25], gi\|1161...	97.0	[0..7]	[112..21]
gi\|91191629, gi\|... - gi\|91223543\|ref\|ZP_01258808.1\| flagellar hook-basal body protein FliE [Vibrio alginolyticus 12G01], ...	96.0	[0..7]	[112..21]
FLIE_DESHY - Flagellar hook-basal body complex protein FliE OS=Desulfitobacterium hafniense (strain Y51) GN=fliE ...	96.0	[0..2]	[112..3]
gi\|153836964, gi... - gi\|153836964\|ref\|ZP_01989631.1\| flagellar hook-basal body complex protein (FliE) [Vibrio parahaemoly... gi\|28899024, gi\|... - gi\|28899024\|ref\|NP_798629.1\| flagellar hook-basal body protein FliE [Vibrio parahaemolyticus RIMD 22... gi\|28807243, gi\|... - gi\|7327275\|gb\|AAF59654.1\| FliE [Vibrio parahaemolyticus], gi\|28807243\|dbj\|BAC60513.1\| flagellar hook...	95.0	[0..12]	[112..1]
FLIE_DESHD - Flagellar hook-basal body complex protein FliE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 1...	94.0	[0..10]	[112..11]
gi\|161486614 - gi\|161486614\|ref\|NP_935275.2\| flagellar hook-basal body protein FliE [Vibrio vulnificus YJ016] gi\|27365279, gi\|... - gi\|27365279\|ref\|NP_760807.1\| flagellar hook-basal body protein FliE [Vibrio vulnificus CMCP6], gi\|27...	94.0	[0..12]	[112..1]
FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS... FLIE_THEMA - Flagellar hook-basal body complex protein FliE OS=Thermotoga maritima GN=fliE PE=3 SV=1	93.0	[0..1]	[112..1]
gi\|58582223, gi\|... - gi\|58582223\|ref\|YP_201239.1\| flagellar protein [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842681...	93.0	[0..6]	[111..65]
gi\|91785610, gi\|... - gi\|91785610\|ref\|YP_560816.1\| flagellar hook-basal body complex protein FliE [Burkholderia xenovorans...	89.0	[0..8]	[112..29]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDGIKQLGS LSLTRGASGV SSLTESLFGG EQQSTPAQQT GASFASVLGN VSMDAMNNLK  60
   61 KAEVASFEGI QGKANTREVV DAVLSAEQSL QTAIALRDKI VSAYLDITKM QI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.920819
Match:	PF02049.9
Description:	No description for PF02049.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.967	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.948	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.929	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.916	N/A	N/A	a.13.1	alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View	Download	0.910	N/A	N/A	a.29.11	Description not found.
View	Download	0.905	N/A	N/A	a.24.1	Apolipoprotein
View	Download	0.870	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.861	N/A	N/A	a.24.14	FAT domain of focal adhesion kinase
View	Download	0.859	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.844	N/A	N/A	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits