YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGN_ECOLI
Organism:	Escherichia coli
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGN_ECOLI.

Description	E-value	Query Range	Subject Range
FLGN_YEREN - Flagella synthesis protein flgN - Yersinia enterocolitica	118.0	[0..1]	[138..3]
gi\|157154753, gi... - gi\|75190128\|ref\|ZP_00703395.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	117.0	[0..1]	[138..1]
gi\|49611159, gi\|... - gi\|50120633\|ref\|YP_049800.1\| flagella synthesis protein [Pectobacterium atrosepticum SCRI1043], gi\|4...	117.0	[0..1]	[137..1]
gi\|188488083, gi... - gi\|75513514\|ref\|ZP_00735918.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|218553649, gi... - gi\|218553649\|ref\|YP_002386562.1\| export chaperone for FlgK and FlgL [Escherichia coli IAI1], gi\|2183... gi\|75257506, gi\|... - gi\|75257506\|ref\|ZP_00729009.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|193069496, gi... - gi\|75235926\|ref\|ZP_00720063.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75228338, gi\|... - gi\|75228338\|ref\|ZP_00714988.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75210343, gi\|... - gi\|75210343\|ref\|ZP_00710505.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75195254, gi\|... - gi\|75195254\|ref\|ZP_00705324.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|187428885, gi... - gi\|75175803\|ref\|ZP_00695998.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	117.0	[0..1]	[138..1]
gi\|81245875, gi\|... - gi\|82544464\|ref\|YP_408411.1\| protein of flagellar biosynthesis [Shigella boydii Sb227], gi\|81245875\|...	116.0	[0..1]	[138..1]
gi\|194432360, gi... - gi\|83570483\|ref\|ZP_00921927.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	115.0	[0..1]	[138..1]
gi\|22126397, gi\|... - gi\|22126397\|ref\|NP_669820.1\| flagellar biosynthesis protein [Yersinia pestis KIM], gi\|21959384\|gb\|AA... gi\|89105478 - gi\|89105478\|ref\|ZP_01177997.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|45436276, gi\|... - gi\|45441415\|ref\|NP_992954.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Microtus str. 9...	115.0	[0..1]	[138..3]
gi\|24051367, gi\|... - gi\|24112481\|ref\|NP_706991.1\| flagella synthesis protein FlgN [Shigella flexneri 2a str. 301], gi\|240... gi\|30062608, gi\|... - gi\|30062608\|ref\|NP_836779.1\| flagella synthesis protein FlgN [Shigella flexneri 2a str. 2457T], gi\|3... gi\|110805088, gi... - gi\|110805088\|ref\|YP_688608.1\| flagella synthesis protein FlgN [Shigella flexneri 5 str. 8401], gi\|11...	115.0	[0..1]	[138..1]

Back

Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLAEILDQ MSAVLNDLKT VMDQEQQHLS MGQINGSQLQ WITEQKSSLL ATLDYLEQLR  60
   61 RKEPNTANSV DISQRWQEIT VKTQQLRQMN QHNGWLLEGQ IERNQQALEM LKPHQEPTLY 120
  121 GANGQTSTTH RGGKKISI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	2fupA
Description:	Crystal structure of hypothetical protein PA3352 from Pseudomonas aeruginosa at 1.48 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits