YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGM_YEREN
Organism:	Yersinia enterocolitica
Length:	99 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGM_YEREN.

Description	E-value	Query Range	Subject Range
gi\|1588994 - gi\|1588994\|prf\|\|2209422B flgM gene	91.0	[0..1]	[99..1]
gi\|238788310, gi... - gi\|77975731\|ref\|ZP_00831265.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	89.0	[0..1]	[99..1]
gi\|77979941, gi\|... - gi\|77979941\|ref\|ZP_00835357.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	87.0	[0..1]	[99..1]
gi\|145598615, gi... - gi\|145598615\|ref\|YP_001162691.1\| anti-sigma28 factor FlgM [Yersinia pestis Pestoides F], gi\|14521031... gi\|229896237, gi... - gi\|229896237\|ref\|ZP_04511407.1\| negative regulator of flagellin synthesis [Yersinia pestis Pestoides... gi\|229897172, gi... - gi\|229897172\|ref\|ZP_04512328.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|229897898, gi... - gi\|229897898\|ref\|ZP_04513049.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|149366256, gi... - gi\|149366256\|ref\|ZP_01888291.1\| negative regulator of flagellin synthesis [Yersinia pestis CA88-4125... gi\|166010830, gi... - gi\|166010830\|ref\|ZP_02231728.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar An... gi\|166208206, gi... - gi\|166211026\|ref\|ZP_02237061.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar An... gi\|167401131, gi... - gi\|167401131\|ref\|ZP_02306634.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar An... gi\|162418869, gi... - gi\|77636013\|ref\|ZP_00798091.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|167420327, gi... - gi\|167420327\|ref\|ZP_02312080.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|77628869, gi\|... - gi\|77628869\|ref\|ZP_00791455.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|167055151, gi... - gi\|167425752\|ref\|ZP_02317505.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Me... gi\|167469714 - gi\|167469714\|ref\|ZP_02334418.1\| negative regulator of flagellin synthesis [Yersinia pestis FV-1] gi\|170024652, gi... - gi\|170024652\|ref\|YP_001721157.1\| anti-sigma28 factor FlgM [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|186895109, gi... - gi\|186895109\|ref\|YP_001872221.1\| anti-sigma28 factor FlgM [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|89105477, gi\|... - gi\|89105477\|ref\|ZP_01177996.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact... gi\|108807168, gi... - gi\|108807168\|ref\|YP_651084.1\| anti-sigma28 factor FlgM [Yersinia pestis Antiqua], gi\|108779081\|gb\|AB... gi\|229902870, gi... - gi\|229902870\|ref\|ZP_04517987.1\| negative regulator of flagellin synthesis [Yersinia pestis Nepal516]... gi\|165925987, gi... - gi\|165925987\|ref\|ZP_02221819.1\| negative regulator of flagellin synthesis [Yersinia pestis biovar Or... gi\|25510407 - pir\|\|AB0219 negative regulator of flagellin synthesis flgM [imported] - Yersinia pestis (strain CO92... gi\|45436275, gi\|... - gi\|45441414\|ref\|NP_992953.1\| anti-sigma28 factor FlgM [Yersinia pestis biovar Microtus str. 91001], ... gi\|21959383, gi\|... - gi\|22126396\|ref\|NP_669819.1\| anti-sigma28 factor FlgM [Yersinia pestis KIM], gi\|21959383\|gb\|AAM86070... gi\|218928917, gi... - gi\|218928917\|ref\|YP_002346792.1\| anti-sigma28 factor FlgM [Yersinia pestis CO92], gi\|16122049\|ref\|NP... gi\|51589288, gi\|... - gi\|51596006\|ref\|YP_070197.1\| anti-sigma28 factor FlgM [Yersinia pseudotuberculosis IP 32953], gi\|515... Q66BU7\|Q66BU7_YERPS - Negative regulator of flagellin synthesis - Yersinia pseudotuberculosis	83.0	[0..2]	[98..3]
gi\|77957057, gi\|... - gi\|77957057\|ref\|ZP_00821124.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	83.0	[0..1]	[99..1]
gi\|67544017, gi\|... - gi\|67544017\|ref\|ZP_00421947.1\| hypothetical protein Bcep1808DRAFT_5961 [Burkholderia vietnamiensis G...	82.0	[0..2]	[98..74]
gi\|238799102, gi... - gi\|77960290\|ref\|ZP_00824169.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	80.0	[0..1]	[99..1]
gi\|193069472, gi... - gi\|75235925\|ref\|ZP_00720062.1\| COG2747: Negative regulator of flagellin synthesis (anti-sigma28 fact...	79.0	[0..1]	[99..1]
gi\|85836109, gi\|... - gi\|86146162\|ref\|ZP_01064488.1\| polar flagellar FlgM [Vibrio sp. MED222], gi\|85836109\|gb\|EAQ54241.1\| ...	78.0	[0..3]	[95..21]

Back

Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDRTQPLL PVTPVQPRET SDIAQQTRKP SAQSKTPVSG TEVKLSDAQA KLMQPGSQDI  60
   61 NVERVETLKQ AIRSGQLTMD TGKIADALLK NVADDLKNS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.61
Match:	1rp3B
Description:	Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits