YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGJ_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGJ_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|194545206, gi... - gi\|84322077\|ref\|ZP_00970422.1\| COG1705: Muramidase (flagellum-specific) [Pseudomonas aeruginosa C371... gi\|194550428, gi... - gi\|84328547\|ref\|ZP_00976551.1\| COG1705: Muramidase (flagellum-specific) [Pseudomonas aeruginosa 2192...	3.0E-91	[1..400]	[1..400]
gi\|218773179, gi... - gi\|218892951\|ref\|YP_002441820.1\| flagellar rod assembly protein/muramidase FlgJ [Pseudomonas aerugin... gi\|107100530 - gi\|107100530\|ref\|ZP_01364448.1\| hypothetical protein PaerPA_01001555 [Pseudomonas aeruginosa PACS2] gi\|116049014, gi... - gi\|32041090\|ref\|ZP_00138673.1\| COG1705: Muramidase (flagellum-specific) [Pseudomonas aeruginosa UCBP...	6.0E-91	[1..400]	[1..400]
gi\|152986130, gi... - gi\|94415943\|ref\|ZP_01295775.1\| hypothetical protein PaerP_01002272 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-88	[1..400]	[1..400]
gi\|117612109, gi... - gi\|78686549\|ref\|ZP_00851315.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella sp....	7.0E-75	[11..385]	[3..376]
gi\|24349416, gi\|... - gi\|24374752\|ref\|NP_718795.1\| peptidoglycan hydrolase [Shewanella oneidensis MR-1], gi\|24349416\|gb\|AA... SO3241 - flagellar protein FlgJ	7.0E-75	[11..385]	[3..371]
gi\|77810896, gi\|... - gi\|77814151\|ref\|ZP_00813417.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella put... gi\|124546481, gi... - gi\|124546481\|ref\|ZP_01705557.1\| flagellar rod assembly protein/muramidase FlgJ [Shewanella putrefaci...	1.0E-74	[11..385]	[3..372]
gi\|113909402, gi... - gi\|160876198\|ref\|YP_001555514.1\| peptidoglycan hydrolase [Shewanella baltica OS195], gi\|160861720\|gb...	1.0E-74	[11..385]	[3..367]
gi\|63257408, gi\|... - gi\|66046701\|ref\|YP_236542.1\| peptidoglycan hydrolase [Pseudomonas syringae pv. syringae B728a], gi\|6...	2.0E-74	[7..399]	[6..412]
gi\|68520773, gi\|... - gi\|68541512\|ref\|ZP_00581255.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella bal...	2.0E-74	[11..385]	[3..367]
gi\|120598237, gi... - gi\|82741811\|ref\|ZP_00904523.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella sp....	7.0E-74	[11..385]	[3..372]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRLLSGIG AGPDSGSYTD LNRLNQLKVG KDRDGEANIR KVAQEFESLF LNEMLKSMRS  60
   61 ANEALGDGNF MNSQTTKQYQ DMYDQQLSVS LSKNAGGIGL ADVLVRQLSK MKQGS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGNGENPFAR VAENGAGRWP SNPSAQAGKA LPMPEAGRDD SKLLNQRRLA LPGKLAERML  60
   61 AGIVPSASPA ASQMQSLGQD SYLPAQSYPA ASRRGFSTDG VDSQGSRRIA QPPLARG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [233-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSMFASADEF IATMLPMAQK AAERIGVDAR YLVAQAALET GWGKSIIRQQ DGGSSHNLFG  60
   61 IKTGSRWDGA SARALTTEYE GGKAVKEIAA FRSYSSFEQS FHDYVSFLQG NDRYQNALDS 120
  121 AANPERFMQE LQRAGYATDP QYARKVAQIA RQMQTYQAVA AAGTPPLG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.958607
Match:	PF01832.11
Description:	No description for PF01832.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits