YRC Public Data Repository - Protein Structure Prediction

Protein:	FLGG_SALTY
Organism:	Salmonella typhimurium
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLGG_SALTY.

Description	E-value	Query Range	Subject Range
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	259.0	[0..1]	[260..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	256.0	[0..1]	[260..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	255.0	[0..1]	[260..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	254.0	[0..1]	[259..81]
gi\|77959474, gi\|... - gi\|77959474\|ref\|ZP_00823493.1\| COG4786: Flagellar basal body rod protein [Yersinia bercovieri ATCC 4...	254.0	[0..1]	[260..1]
gi\|94427542, gi\|... - gi\|94500243\|ref\|ZP_01306776.1\| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65], gi\|94...	253.0	[0..1]	[259..1]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	253.0	[0..1]	[260..1]
gi\|83647171, gi\|... - gi\|83647171\|ref\|YP_435606.1\| flagellar basal body rod protein FlgG [Hahella chejuensis KCTC 2396], g...	252.0	[0..1]	[259..1]
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	252.0	[0..1]	[259..1]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	252.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSLWIAKT GLDAQQTNMD VIANNLANVS TNGFKRQRAV FEDLLYQTIR QPGAQSSEQT  60
   61 TLPSGLQIGT GVRPVATERL HSQGNLSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.760	N/A	N/A	a.24.15	FAD-dependent thiol oxidase
View	Download	0.760	N/A	N/A	a.24.15	FAD-dependent thiol oxidase
View	Download	0.745	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.722	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.660	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.660	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.645	N/A	N/A	a.24.15	FAD-dependent thiol oxidase
View	Download	0.645	N/A	N/A	a.24.15	FAD-dependent thiol oxidase
View	Download	0.606	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.587	N/A	N/A	a.177.1	Sigma2 domain of RNA polymerase sigma factors

Predicted Domain #2

Region A:
Residues: [89-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNNSKDVAIK GQGFFQVMLP DGTSAYTRDG SFQVDQNGQL VTAGGFQVQP AITIPANALS  60
   61 ITIGRDGVVS VTQQGQAAPV QVGQLNLTTF MNDTGLESIG ENLYIETQSS GAPNESTPGL 120
  121 NGAGLLYQGY VETSNVNVAE ELVNMIQVQR AYEINSKAVS TTDQMLQKLT QL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.0
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits