YRC Public Data Repository - Protein Structure Prediction

Protein:	FIME_ECOLI
Organism:	Escherichia coli
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIME_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|76874383, gi\|... - gi\|77359472\|ref\|YP_339047.1\| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis...	189.0	[0..3]	[190..121]
gi\|88817458, gi\|... - gi\|88860260\|ref\|ZP_01134898.1\| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D...	188.0	[0..3]	[190..114]
gi\|98662087 - gi\|98662087\|dbj\|GAA00976.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	187.0	[0..2]	[190..152]
gi\|90961911, gi\|... - gi\|90961911\|ref\|YP_535827.1\| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118...	186.0	[0..3]	[190..109]
gi\|228671946, gi... - gi\|229111564\|ref\|ZP_04241115.1\| Tyrosine recombinase xerD [Bacillus cereus Rock1-15], gi\|228671946\|g... gi\|229081347, gi... - gi\|229081347\|ref\|ZP_04213850.1\| Tyrosine recombinase xerD [Bacillus cereus Rock4-2], gi\|228701969\|gb... gi\|228711531, gi... - gi\|229071595\|ref\|ZP_04204813.1\| Tyrosine recombinase xerD [Bacillus cereus F65185], gi\|228711531\|gb\|... gi\|229047783, gi... - gi\|229047783\|ref\|ZP_04193363.1\| Tyrosine recombinase xerD [Bacillus cereus AH676], gi\|228723575\|gb\|E... gi\|229180370, gi... - gi\|229180370\|ref\|ZP_04307713.1\| Tyrosine recombinase xerD [Bacillus cereus 172560W], gi\|228603117\|gb... gi\|228631254, gi... - gi\|229152292\|ref\|ZP_04280485.1\| Tyrosine recombinase xerD [Bacillus cereus m1550], gi\|228631254\|gb\|E... gi\|228636835, gi... - gi\|229146665\|ref\|ZP_04275032.1\| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24], gi\|228636835\|... gi\|228653975, gi... - gi\|229129370\|ref\|ZP_04258341.1\| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4], gi\|228653975\|... gi\|29897733, gi\|... - gi\|30022176\|ref\|NP_833807.1\| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 14579], g... gi\|228941242, gi... - gi\|228941242\|ref\|ZP_04103795.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner A... gi\|228909920, gi... - gi\|228909920\|ref\|ZP_04073741.1\| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200], gi\|22884... gi\|228857041, gi... - gi\|228902600\|ref\|ZP_04066751.1\| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|218543889, gi... - gi\|218899252\|ref\|YP_002447663.1\| integrase/recombinase XerD [Bacillus cereus G9842], gi\|218543889\|gb... gi\|228778934, gi... - gi\|228980765\|ref\|ZP_04141070.1\| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407], gi\|2287789... gi\|228974174, gi... - gi\|228974174\|ref\|ZP_04134744.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringien... gi\|206734005, gi... - gi\|206971233\|ref\|ZP_03232184.1\| integrase/recombinase XerD [Bacillus cereus AH1134], gi\|206734005\|gb... gi\|228799379, gi... - gi\|228960355\|ref\|ZP_04122008.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani ... gi\|218235095, gi... - gi\|218235095\|ref\|YP_002368894.1\| integrase/recombinase XerD [Bacillus cereus B4264], gi\|218163052\|gb... gi\|228954374, gi... - gi\|228954374\|ref\|ZP_04116400.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki s...	186.0	[0..2]	[190..107]
gi\|47568147, gi\|... - gi\|47568147\|ref\|ZP_00238851.1\| integrase/recombinase XerD [Bacillus cereus G9241], gi\|47555137\|gb\|EA... gi\|222097540, gi... - gi\|222097540\|ref\|YP_002531597.1\| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1], ...	186.0	[0..2]	[190..96]
gi\|217961583, gi... - gi\|217961583\|ref\|YP_002340153.1\| integrase/recombinase XerD [Bacillus cereus AH187], gi\|217064224\|gb... gi\|206976263, gi... - gi\|206976263\|ref\|ZP_03237171.1\| integrase/recombinase XerD [Bacillus cereus H3081.97], gi\|206745459\|... gi\|228585232, gi... - gi\|229198213\|ref\|ZP_04324921.1\| Tyrosine recombinase xerD [Bacillus cereus m1293], gi\|228585232\|gb\|E... gi\|229140825, gi... - gi\|229140825\|ref\|ZP_04269370.1\| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26], gi\|228642615\|... gi\|42783204, gi\|... - gi\|42783204\|ref\|NP_980451.1\| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987], g...	185.0	[0..2]	[190..107]
gi\|47551979, gi\|... - gi\|47778274\|ref\|YP_020956.2\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames ... gi\|170668882, gi... - gi\|170687265\|ref\|ZP_02878483.1\| integrase/recombinase XerD [Bacillus anthracis str. A0465], gi\|17066... gi\|30264167, gi\|... - gi\|30264167\|ref\|NP_846544.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames],... gi\|167512483, gi... - gi\|167639424\|ref\|ZP_02397695.1\| integrase/recombinase XerD [Bacillus anthracis str. A0193], gi\|16751... gi\|65321483, gi\|... - gi\|65321483\|ref\|ZP_00394442.1\| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A201... gi\|172081977, gi... - gi\|177652642\|ref\|ZP_02935058.1\| integrase/recombinase XerD [Bacillus anthracis str. A0174], gi\|17208... gi\|170705812, gi... - gi\|170705812\|ref\|ZP_02896275.1\| integrase/recombinase XerD [Bacillus anthracis str. A0389], gi\|17012... gi\|196030307, gi... - gi\|196038584\|ref\|ZP_03105892.1\| integrase/recombinase XerD [Bacillus cereus NVH0597-99], gi\|19603030... gi\|190562864, gi... - gi\|190565945\|ref\|ZP_03018864.1\| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I], gi\|1... gi\|49480325, gi\|... - gi\|49480325\|ref\|YP_038149.1\| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar... gi\|218535959, gi... - gi\|218905229\|ref\|YP_002453063.1\| integrase/recombinase XerD [Bacillus cereus AH820], gi\|218535959\|gb... gi\|49186997, gi\|... - gi\|49186997\|ref\|YP_030249.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne... gi\|196021965, gi... - gi\|196047216\|ref\|ZP_03114432.1\| integrase/recombinase XerD [Bacillus cereus 03BB108], gi\|196021965\|g... gi\|167633747, gi... - gi\|167633747\|ref\|ZP_02392071.1\| integrase/recombinase XerD [Bacillus anthracis str. A0442], gi\|16753... gi\|165871247, gi... - gi\|165871247\|ref\|ZP_02215897.1\| integrase/recombinase XerD [Bacillus anthracis str. A0488], gi\|16471... gi\|225866075, gi... - gi\|225866075\|ref\|YP_002751453.1\| integrase/recombinase XerD [Bacillus cereus 03BB102], gi\|225786005\|... gi\|227002405, gi... - gi\|227816868\|ref\|YP_002816877.1\| integrase/recombinase XerD [Bacillus anthracis str. CDC 684], gi\|22... gi\|228830429, gi... - gi\|228929139\|ref\|ZP_04092166.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheri... gi\|228811796, gi... - gi\|228947809\|ref\|ZP_04110096.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey ... gi\|229093151, gi... - gi\|229093151\|ref\|ZP_04224269.1\| Tyrosine recombinase xerD [Bacillus cereus Rock3-42], gi\|228690125\|g... gi\|228659747, gi... - gi\|229123612\|ref\|ZP_04252807.1\| Tyrosine recombinase xerD [Bacillus cereus 95/8201], gi\|228659747\|gb... gi\|229186335, gi... - gi\|229186335\|ref\|ZP_04313500.1\| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1], gi\|228597129\|g... gi\|229604915, gi... - gi\|229604915\|ref\|YP_002868390.1\| integrase/recombinase XerD [Bacillus anthracis str. A0248], gi\|2292... gi\|254683858 - gi\|254683858\|ref\|ZP_05147718.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNE... gi\|254721693 - gi\|254721693\|ref\|ZP_05183482.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A10... gi\|254736205 - gi\|254736205\|ref\|ZP_05193911.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Wes... gi\|254744094 - gi\|254744094\|ref\|ZP_05201777.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kru... gi\|254754126 - gi\|254754126\|ref\|ZP_05206161.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vol... gi\|254758184 - gi\|254758184\|ref\|ZP_05210211.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Aus... gi\|118479292, gi... - gi\|118479292\|ref\|YP_896443.1\| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. A...	185.0	[0..2]	[190..107]
gi\|51892959, gi\|... - gi\|51892959\|ref\|YP_075650.1\| recombinase [Symbiobacterium thermophilum IAM 14863], gi\|51856648\|dbj\|B...	185.0	[0..3]	[190..106]
gi\|228625631, gi... - gi\|229157674\|ref\|ZP_04285749.1\| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342], gi\|228625631\|... gi\|228987282, gi... - gi\|228987282\|ref\|ZP_04147403.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiens... gi\|51974871, gi\|... - gi\|52141402\|ref\|YP_085426.1\| site-specific tyrosine recombinase XerD [Bacillus cereus E33L], gi\|5197...	185.0	[0..2]	[190..107]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRRYLTGK EVQAMMQAVC YGATGARDYC LILLAYRHGM RISELLDLHY QDLDLNEGRI  60
   61 NIRRLKNGFS TVHPLRFDER EAVERWTQER ANWKGADRTD AIFISRRGSR LSRQQAYRII 120
  121 RDAGIEAGTV TQTHPHMLRH ACGYELAERG ADTRLIQDYL GHRNIRHTVR YTASNAARFA 180
  181 GLWERNNLIN EKLKREEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.221849
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.32470898553998	bayes_pls_golite062009
site-specific recombinase activity	0.63725674285826	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: