YRC Public Data Repository - Protein Structure Prediction

Protein:	FIMC_ECOLI
Organism:	Escherichia coli
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIMC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218373001, gi... - gi\|218703015\|ref\|YP_002410644.1\| chaperone, periplasmic [Escherichia coli IAI39], gi\|218373001\|emb\|C... gi\|52139555, gi\|... - gi\|52139705\|gb\|AAU29151.1\| type I fimbrial chaperone [Escherichia coli], gi\|52139555\|gb\|AAU29076.1\| ...	252.0	[0..1]	[241..1]
gi\|208811930, gi... - gi\|208811930\|ref\|ZP_03253259.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208807646, gi... - gi\|208807646\|ref\|ZP_03249983.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|209749340, gi... - pir\|\|F86129 hypothetical protein fimC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|195937324 - gi\|195937324\|ref\|ZP_03082706.1\| periplasmic chaperone [Escherichia coli O157:H7 str. EC4024] gi\|168797882, gi... - gi\|189379483\|gb\|EDU97899.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC508], gi\|1687978... gi\|12519323, gi\|... - gi\|15804891\|ref\|NP_290932.1\| periplasmic chaperone, required for type 1 fimbriae [Escherichia coli O... gi\|13364753 - gi\|13364753\|dbj\|BAB38698.1\| periplasmic chaperone required for type 1 fimbriae [Escherichia coli O15... gi\|217325110, gi... - gi\|217325110\|ref\|ZP_03441194.1\| chaperone protein FimC [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|13364753 - gi\|13364753\|dbj\|BAB38698.1\| periplasmic chaperone required for type 1 fimbriae [Escherichia coli O15... gi\|209399598, gi... - gi\|209399598\|ref\|YP_002273841.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4115], gi\|2... gi\|208740859, gi... - gi\|208820736\|ref\|ZP_03261056.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|189368929, gi... - gi\|189368929\|gb\|EDU87345.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4501], gi\|168760... gi\|189357919, gi... - gi\|189357919\|gb\|EDU76338.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4401], gi\|168754... gi\|188016151, gi... - gi\|188016151\|gb\|EDU54273.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4113], gi\|168749... gi\|189374774, gi... - gi\|189374774\|gb\|EDU93190.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC869], gi\|1687849... gi\|168782827, gi... - gi\|188999747\|gb\|EDU68733.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4076], gi\|168782... gi\|187770236, gi... - gi\|187770236\|gb\|EDU34080.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4196], gi\|168773... gi\|168766591, gi... - gi\|189364320\|gb\|EDU82739.1\| chaperone protein FimC [Escherichia coli O157:H7 str. EC4486], gi\|168766... gi\|254595718, gi... - gi\|254796318\|ref\|YP_003081155.1\| periplasmic chaperone, required for type 1 fimbriae [Escherichia co...	252.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKNVNVRK SQEITFCLLA GILMFMAMMV AGRAEAGVAL GATRVIYPAG QKQEQLAVTN  60
   61 NDENSTYLIQ SWVENADGVK DGRFIVTPPL FAMKGKKENT LRILDATNNQ LPQDRESLFW 120
  121 MNVKAIPSMD KSKLTENTLQ LAIISRIKLY YRPAKLALPP DQAAEKLRFR RSANSLTLIN 180
  181 PTPYYLTVTE LNAGTRVLEN ALVPPMGEST VKLPSDAGSN ITYRTINDYG ALTPKMTGVM 240
  241 E

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Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1kiuA
Description:	Periplasmic chaperone FimC; FimC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.40357083304367	bayes_pls_golite062009
protein binding	1.19650199611166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: