YRC Public Data Repository - Protein Structure Prediction

Protein:	FHIA_ECOLI
Organism:	Escherichia coli
Length:	579 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FHIA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|59712444, gi\|... - gi\|59712444\|ref\|YP_205220.1\| flagellar biosynthesis protein FlhA [Vibrio fischeri ES114], gi\|5948054...	740.0	[0..7]	[578..130]
gi\|114226536, gi... - gi\|78700763\|ref\|ZP_00865218.1\| Flagellar biosynthesis protein FlhA [Alkalilimnicola ehrlichei MLHE-1...	739.0	[0..7]	[577..125]
gi\|4322011 - gi\|4322011\|gb\|AAD15914.1\| polar flagellar assembly protein FlhA [Vibrio parahaemolyticus]	737.0	[0..7]	[578..130]
gi\|27361441, gi\|... - gi\|27365294\|ref\|NP_760822.1\| flagellar biosynthesis protein FlhA [Vibrio vulnificus CMCP6], gi\|27361... gi\|37199399, gi\|... - gi\|37680651\|ref\|NP_935260.1\| flagellar biosynthesis protein FlhA [Vibrio vulnificus YJ016], gi\|37199...	736.0	[0..7]	[578..132]
gi\|84388125, gi\|... - gi\|84388125\|ref\|ZP_00991021.1\| flagellar biosynthesis protein [Vibrio splendidus 12B01], gi\|84377192...	736.0	[0..7]	[578..130]
gi\|126637606, gi... - gi\|78366389\|ref\|ZP_00836669.1\| Flagellar biosynthesis protein FlhA [Shewanella sp. PV-4], gi\|7836143...	736.0	[0..7]	[578..129]
gi\|85836069, gi\|... - gi\|86146122\|ref\|ZP_01064448.1\| flagellar biosynthesis protein [Vibrio sp. MED222], gi\|85836069\|gb\|EA...	735.0	[0..7]	[578..130]
gi\|119767918, gi... - gi\|68545835\|ref\|ZP_00585384.1\| Flagellar biosynthesis protein FlhA [Shewanella amazonensis SB2B], gi...	735.0	[0..7]	[578..129]
gi\|28807228 - gi\|28807228\|dbj\|BAC60498.1\| polar flagellar assembly protein FlhA [Vibrio parahaemolyticus RIMD 2210... gi\|28807228, gi\|... - gi\|28899009\|ref\|NP_798614.1\| flagellar biosynthesis protein FlhA [Vibrio parahaemolyticus RIMD 22106...	734.0	[0..7]	[578..130]
gi\|24349385, gi\|... - gi\|24374725\|ref\|NP_718768.1\| flagellar biosynthesis protein FlhA [Shewanella oneidensis MR-1], gi\|24... SO3213 - flagellar biosynthesis protein FlhA	732.0	[0..14]	[578..136]

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Predicted Domain #1

Region A:
Residues: [1-37]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRSDLLTL LTINFIVVTK GAERISEVSA RFTLDAM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [38-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGKQMAIDAD LNAGLINQAQ AQTRRKDVAS EADFYGAMDG ASKFVRGDAI AGMMILAINL  60
   61 IGGVCIGIFK YNLSADAAFQ QYVLMTIGDG LVAQIPSLLL STAAAIIVTR VSDNGDIAHD 120
  121 VRNQLLASPS VLYTATGIMF VLAVVPGMPH LPFLLFSALL GFTGWRMSKQ PLAAEAEEKS 180
  181 LETLTRTITE TSEQQVSWET IPLIEPISLS LGYKLVAL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [256-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDKAQGNPLT QRIRGVRQVI SDGNGVLLPE IRIRENFRLK PSQYAIFING IKADEADIPA  60
   61 DKLMALPSSE TYGEIDGVQG NDPAYGMPVT WIQAAQKAKA LNMGYQVIDS ASV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [369-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IATHVNKIVR SYIPDLFNYD DITQLHNRLS STAPRLAEDL SAALNYSQLL KVYRALLTEG  60
   61 VSLRDIVTIA TVLVASSTVT KDHILLAADV RLALRRSITH PFVRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.877	N/A	N/A	a.74.1	Cyclin-like

Predicted Domain #5

Region A:
Residues: [474-579]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QELTVYTLNN ELENLLTNVV NQAQQGGKVM LDSVPVDPNM LNQFQSTMPQ VKEQMKAAGK  60
   61 DPVLLVPPQL RPLLARYARL FAPGLHVLSY NEVPDELELK IMGALM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.860	N/A	N/A	c.78.2	Aspartate/glutamate racemase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits