YRC Public Data Repository - Protein Structure Prediction

Protein:	FEPG_ECOLI
Organism:	Escherichia coli
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FEPG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83375265, gi\|... - gi\|83375265\|ref\|ZP_00920028.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	233.0	[0..22]	[328..440]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	223.0	[0..3]	[329..60]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	222.0	[0..7]	[330..37]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	219.0	[0..6]	[329..18]
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	218.0	[0..6]	[329..18]
Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii (strain ATCC 43067... Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii GN=MJ0087 PE=3 SV=...	218.0	[0..5]	[329..11]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	216.0	[0..3]	[328..10]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	216.0	[0..5]	[329..13]
gi\|83368401, gi\|... - gi\|83368401\|ref\|ZP_00913264.1\| similar to ABC-type Fe3+-siderophore transport system permease compon...	214.0	[0..3]	[328..243]
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	211.0	[0..30]	[327..580]

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Predicted Domain #1

Region A:
Residues: [1-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYVSRRLLI TCLLLVSACV VAGIWGLRSG AVTLETSQVF AALMGDAPRS MTMVVTEWRL  60
   61 PRVLMALLIG AALGVSGAIF QSLMRNPLGS PDVMGFNTGA WSGVLVAMVL FGQDLTAIAL 120
  121 SAMVGGIVTS LLVWLLAWRN GIDTFRLIII GIGVRAMLVA FNTWLLLKAS LETALTAGLW 180
  181 NAGSLNGLTW AKTSPSAPII ILMLIAAALL VRRMRLLEMG DDTACALGVS VERSRLLMML 240
  241 VAVVLTAAAT ALAGPISFIA LVAPHIARRI SGTARWGLTQ AALCGALLLL AADLCAQQLF 300
  301 MPYQLPVGVV TVSLGGIYLI VLLIQESRKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits