YRC Public Data Repository - Protein Structure Prediction

Protein:	FBPB_ECOLI
Organism:	Escherichia coli
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBPB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|67855256, gi\|... - gi\|67922906\|ref\|ZP_00516403.1\| Binding-protein-dependent transport systems inner membrane component:...	102.0	[0..2]	[114..113]
gi\|71672847, gi\|... - gi\|71673599\|ref\|ZP_00671347.1\| Binding-protein-dependent transport systems inner membrane component:...	99.0	[0..2]	[108..113]
gi\|47556726, gi\|... - gi\|47566173\|ref\|ZP_00237201.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus cer... gi\|228984459, gi... - gi\|228984459\|ref\|ZP_04144637.1\| Spermidine/putrescine ABC transporter, permease [Bacillus thuringien...	98.0	[0..5]	[105..154]
gi\|75700193, gi\|... - gi\|75906468\|ref\|YP_320764.1\| molybdate ABC transporter permease [Anabaena variabilis ATCC 29413], gi...	98.0	[0..1]	[112..112]
gi\|152974813, gi... - gi\|89200943\|ref\|ZP_01179692.1\| Binding-protein-dependent transport systems inner membrane component ...	98.0	[0..6]	[105..155]
gi\|23129877, gi\|... - gi\|23129877\|ref\|ZP_00111700.1\| COG1118: ABC-type sulfate/molybdate transport systems, ATPase compone...	98.0	[0..2]	[115..113]
gi\|229166220, gi... - gi\|229166220\|ref\|ZP_04293980.1\| Spermidine/putrescine ABC transporter, permease [Bacillus cereus AH6... gi\|89157547, gi\|... - gi\|89204486\|ref\|ZP_01183063.1\| Binding-protein-dependent transport systems inner membrane component ...	98.0	[0..5]	[105..154]
gi\|118416086, gi... - gi\|118476861\|ref\|YP_894012.1\| spermidine/putrescine ABC transporter, permease [Bacillus thuringiensi... gi\|218536778, gi... - gi\|218902494\|ref\|YP_002450328.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus c... gi\|47501713, gi\|... - gi\|47526565\|ref\|YP_017914.1\| spermidine/putrescine ABC transporter permease [Bacillus anthracis str.... gi\|49184219, gi\|... - gi\|49184219\|ref\|YP_027471.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus anthr... gi\|30255244, gi\|... - gi\|30261390\|ref\|NP_843767.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus anthr... gi\|42736393, gi\|... - gi\|42780474\|ref\|NP_977721.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus cereu... gi\|65318654, gi\|... - gi\|65318654\|ref\|ZP_00391613.1\| COG1177: ABC-type spermidine/putrescine transport system, permease co... gi\|254758825 - gi\|254758825\|ref\|ZP_05210852.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus an... gi\|254753729 - gi\|254753729\|ref\|ZP_05205764.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus an... gi\|254740342 - gi\|254740342\|ref\|ZP_05198033.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus an... gi\|254733971 - gi\|254733971\|ref\|ZP_05191685.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus an... gi\|254726215 - gi\|254726215\|ref\|ZP_05187997.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus an... gi\|254682553 - gi\|254682553\|ref\|ZP_05146414.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus an... gi\|228693033, gi... - gi\|229090339\|ref\|ZP_04221583.1\| Spermidine/putrescine ABC transporter, permease [Bacillus cereus Roc... gi\|227815872, gi... - gi\|227815872\|ref\|YP_002815881.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus a... gi\|49477488, gi\|... - gi\|49477488\|ref\|YP_035514.1\| spermidine/putrescine ABC transporter, permease [Bacillus thuringiensis... gi\|225863249, gi... - gi\|225863249\|ref\|YP_002748627.1\| spermidine/putrescine ABC transporter, permease protein [Bacillus c... gi\|52144047, gi\|... - gi\|52144047\|ref\|YP_082780.1\| spermidine/putrescine ABC transporter, permease [Bacillus cereus E33L],...	97.0	[0..5]	[105..154]
gi\|7445979 - pir\|\|S77084 ABC-type transport protein sll0739 - Synechocystis sp. (strain PCC 6803) gi\|1006620, gi\|1... - gi\|16331977\|ref\|NP_442705.1\| ABC transporter [Synechocystis sp. PCC 6803], gi\|1006620\|dbj\|BAA10776.1...	97.0	[0..2]	[105..113]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQIDKSLDEA SLSLRAGSLR TITHILLPLL RPAILSALIY SFVRAITTVS AIVFLVTPDT  60
   61 RVATAYILNR VEDGEYGVAI AYGSILIVVM LAIIFIFDWL IGESRTSRSK AKNQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.221849
Match:	2onkC
Description:	No description for 2onkC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits