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View Structure Prediction Details

Protein: SO4751
Organism: Shewanella oneidensis
Length: 156 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO4751.

Description E-value Query
Range		 Subject
Range
ATPF_AMBTC - ATP synthase subunit b, chloroplastic OS=Amborella trichopoda GN=atpF PE=3 SV=1
 131.0 [0..2] [156..21]
ATPF_ACOCL - ATP synthase subunit b, chloroplastic OS=Acorus calamus GN=atpF PE=3 SV=1
gi|69215354, gi|... - gi|69215354|gb|AAZ03829.1| ATP synthase CF0 B chain [Acorus americanus], gi|161622296|ref|YP_0015861...
 129.0 [0..2] [156..21]
gi|69215356 - gi|69215356|gb|AAZ03830.1| ATP synthase CF0 B chain [Ginkgo biloba]
 129.0 [0..2] [156..21]
gi|82754615 - gi|82754615|gb|ABB90029.1| ATP synthase CF0 B chain [Solanum tuberosum]
 128.0 [0..2] [156..21]
ATPF_ANTFO - ATP synthase subunit b, chloroplastic OS=Anthoceros formosae GN=atpF PE=2 SV=1
 127.0 [0..3] [156..22]
ATPF_SPIOL - ATP synthase subunit b, chloroplastic OS=Spinacia oleracea GN=atpF PE=3 SV=1
 127.0 [0..2] [155..21]
ATPF_TOBAC - ATP synthase subunit b, chloroplastic OS=Nicotiana tabacum GN=atpF PE=2 SV=3
 126.0 [0..2] [156..21]
ATPF_VITVI - ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1
 126.0 [0..2] [155..21]
ATPF_PLAOC - ATP synthase subunit b, chloroplastic OS=Platanus occidentalis GN=atpF PE=3 SV=1
 126.0 [0..2] [155..21]

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Predicted Domain #1
Region A:
Residues: [1-66] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFNATLIGQ TVAFIIFVWF CMKFVWPPLM NAIEARQKRI ADGLADADRA VKDLELAQAK  60
   61 ATDQLK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-156] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAKVTANEII EQANKRKAQI VEEAKTEADA ERAKIIAQGK AEIEAERNRV KEDLRKQVAT  60
   61 LAIMGAEKIL ERSIDPAAHS DIVNKLVAEI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1l2pA
Description: F1F0 ATP synthase subunit B, membrane domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 13.4958765229456 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 11.6977167590263 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 9.95066935525283 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 8.85439283401521 bayes_pls_golite062009
cation transmembrane transporter activity 5.13805155650973 bayes_pls_golite062009
ion transmembrane transporter activity 5.04374327766634 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.64120459994573 bayes_pls_golite062009
transporter activity 2.93091397928047 bayes_pls_golite062009
transmembrane transporter activity 2.82224868778929 bayes_pls_golite062009
substrate-specific transporter activity 2.79688978937497 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle