YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3687
Organism:	Shewanella oneidensis
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3687.

Description	E-value	Query Range	Subject Range
gi\|113969212, gi... - gi\|82495032\|ref\|ZP_00880610.1\| curli production assembly/transport component CsgE, putative [Shewane...	244.0	[0..1]	[135..1]
gi\|78688743, gi\|... - gi\|78688743\|ref\|ZP_00853410.1\| curli production assembly/transport component CsgE, putative [Shewane...	243.0	[0..1]	[135..1]
gi\|117614025, gi... - gi\|78684721\|ref\|ZP_00849504.1\| curli production assembly/transport component CsgE, putative [Shewane...	241.0	[0..1]	[135..1]
gi\|146294076, gi... - gi\|77813146\|ref\|ZP_00812427.1\| curli production assembly/transport component CsgE, putative [Shewane... gi\|82720557, gi\|... - gi\|82742098\|ref\|ZP_00904802.1\| curli production assembly/transport component CsgE, putative [Shewane... gi\|124546300, gi... - gi\|124546300\|ref\|ZP_01705405.1\| curli production assembly/transport component CsgE, putative [Shewan...	241.0	[0..1]	[135..1]
gi\|68521854, gi\|... - gi\|68540635\|ref\|ZP_00580386.1\| curli production assembly/transport component CsgE, putative [Shewane... gi\|217497346, gi... - gi\|217972211\|ref\|YP_002356962.1\| curli production assembly/transport component CsgE, putative [Shewa... gi\|160874156, gi... - gi\|160874156\|ref\|YP_001553472.1\| curli production assembly/transport component CsgE, putative [Shewa...	240.0	[0..1]	[135..1]
gi\|69158499, gi\|... - gi\|91792329\|ref\|YP_561980.1\| curli production assembly/transport component CsgE, putative [Shewanell...	184.0	[0..8]	[133..10]
gi\|68516671, gi\|... - gi\|68545642\|ref\|ZP_00585192.1\| curli production assembly/transport component CsgE, putative [Shewane...	174.0	[0..26]	[127..2]
gi\|56459269, gi\|... - gi\|56459269\|ref\|YP_154550.1\| curli production assembly/transport component, CsgE [Idiomarina loihien...	125.0	[0..27]	[124..19]
gi\|77362113, gi\|... - gi\|77362113\|ref\|YP_341687.1\| curli production assembly/transport component [Pseudoalteromonas halopl...	114.0	[0..12]	[122..12]
gi\|88819330, gi\|... - gi\|88859104\|ref\|ZP_01133745.1\| curli production assembly/transport component [Pseudoalteromonas tuni...	102.0	[0..11]	[135..13]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLTPRLLW ILCSFLFVSA PSALANDDIE ISGLVIDRTL TRFGKDFGFY YASYWRELPF  60
   61 TQGVNVTLYE TVFPQAGTVL TLEVNGTRIY STHFGRRANP VKESAEQAIL LTIDYLALIR 120
  121 ANAITGDFSG TSDDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.530	d.222.1	YbaB-like
View	Download	0.499	d.130.1	S-adenosylmethionine synthetase
View	Download	0.479	d.129.2	Phosphoglucomutase, C-terminal domain
View	Download	0.464	b.55.1	PH domain-like
View	Download	0.461	a.35.1	lambda repressor-like DNA-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits