YRC Public Data Repository - Protein Structure Prediction

Protein:	EXBB_ECOLI
Organism:	Escherichia coli
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXBB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	200.0	[0..2]	[223..26]
gi\|25520839 - pir\|\|F98270 tolQ protein [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gi\|15159594, gi\|... - gi\|15891231\|ref\|NP_356903.1\| hypothetical protein AGR_L_2236 [Agrobacterium tumefaciens str. C58], g...	197.0	[0..2]	[235..51]
gi\|94426764, gi\|... - gi\|94501017\|ref\|ZP_01307541.1\| Biopolymer transport protein [Oceanobacter sp. RED65], gi\|94426764\|gb...	197.0	[0..6]	[223..1]
gi\|83746174, gi\|... - gi\|83746174\|ref\|ZP_00943228.1\| TolQ protein [Ralstonia solanacearum UW551], gi\|83727140\|gb\|EAP74264.... gi\|206591430, gi... - gi\|207728185\|ref\|YP_002256579.1\| tolq-related transport protein [Ralstonia solanacearum MolK2], gi\|2...	195.0	[0..1]	[223..25]
gi\|71849286, gi\|... - gi\|71909665\|ref\|YP_287252.1\| MotA/TolQ/ExbB proton channel [Dechloromonas aromatica RCB], gi\|7184928...	195.0	[0..6]	[225..3]
gi\|71556307, gi\|... - gi\|71735754\|ref\|YP_275910.1\| tolQ protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556307...	194.0	[0..1]	[229..1]
gi\|28871120, gi\|... - gi\|28871120\|ref\|NP_793739.1\| tolQ protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854370... gi\|237800221 - gi\|237800221\|ref\|ZP_04588682.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. oryzae str. ... tr\|F3G1F2\|F3G1F2... - MotA/TolQ/ExbB proton channel OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00040 PE=3 SV=1 gi\|63255367, gi\|... - gi\|66044660\|ref\|YP_234501.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. syringae B728a]... tr\|Q87Y37\|Q87Y37... - TolQ protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolQ-2 PE=3 SV=1 gi\|213926186, gi... - gi\|213969188\|ref\|ZP_03397327.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. tomato T1], ...	193.0	[0..1]	[229..1]
gi\|187730205, gi... - gi\|187730205\|ref\|YP_001881769.1\| tonB-system energizer ExbB [Shigella boydii CDC 3083-94], gi\|187427... gi\|82545391, gi\|... - gi\|82545391\|ref\|YP_409338.1\| biopolymer transport protein ExbB [Shigella boydii Sb227], gi\|81246802\|...	193.0	[0..1]	[244..1]
gi\|89080895, gi\|... - gi\|89094840\|ref\|ZP_01167773.1\| TolQ protein [Oceanospirillum sp. MED92], gi\|89080895\|gb\|EAR60134.1\| ...	192.0	[0..6]	[227..1]
gi\|49081978 - gi\|49081978\|gb\|AAT50389.1\| PA0969 [synthetic construct]	192.0	[0..1]	[223..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNNLMQTDL SVWGMYQHAD IVVKCVMIGL ILASVVTWAI FFSKSVEFFN QKRRLKREQQ  60
   61 LLAEARSLNQ ANDIAADFGS KSLSLHLLNE AQNELELSEG SDDNEGIKER TSFRLERRVA 120
  121 AVGRQMGRGN GYLATIGAIS PFVGLFGTVW GIMNSFIGIA QTQTTNLAVV APGIAEALLA 180
  181 TAIGLVAAIP AVVIYNVFAR QIGGFKAMLG DVAAQVLLLQ SRDLDLEASA AAHPVRVAQK 240
  241 LRAG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.823909
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits