YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3386
Organism:	Shewanella oneidensis
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3386.

Description	E-value	Query Range	Subject Range
gi\|82404424, gi\|... - gi\|82497598\|ref\|ZP_00883130.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82404424\|gb\|...	447.0	[0..1]	[317..1]
gi\|78690741, gi\|... - gi\|78690741\|ref\|ZP_00855381.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78509874\|gb\|...	447.0	[0..1]	[317..1]
gi\|26987477, gi\|... - gi\|26987477\|ref\|NP_742902.1\| hypothetical protein PP_0741 [Pseudomonas putida KT2440], gi\|24982141\|g...	443.0	[0..1]	[316..1]
gi\|82738460, gi\|... - gi\|82738460\|ref\|ZP_00901292.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714438\|g...	442.0	[0..1]	[316..1]
gi\|82719765, gi\|... - gi\|82742877\|ref\|ZP_00905553.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719765\|... gi\|77814869, gi\|... - gi\|77814869\|ref\|ZP_00814121.1\| Protein of unknown function DUF523 [Shewanella putrefaciens CN-32], g...	441.0	[0..1]	[317..1]
gi\|117919613, gi... - gi\|78687306\|ref\|ZP_00852058.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78504955\|gb...	440.0	[0..1]	[317..1]
gi\|113907940, gi... - gi\|160876319\|ref\|YP_001555635.1\| hypothetical protein Sbal195_3213 [Shewanella baltica OS195], gi\|16... gi\|68520282, gi\|... - gi\|68542060\|ref\|ZP_00581797.1\| Protein of unknown function DUF523 [Shewanella baltica OS155], gi\|685...	437.0	[0..1]	[317..1]
gi\|48730108, gi\|... - gi\|77460955\|ref\|YP_350462.1\| hypothetical protein Pfl01_4734 [Pseudomonas fluorescens Pf0-1], gi\|773...	437.0	[0..1]	[316..1]
gi\|23470142, gi\|... - gi\|66044216\|ref\|YP_234057.1\| hypothetical protein Psyr_0963 [Pseudomonas syringae pv. syringae B728a...	431.0	[0..7]	[316..5]
gi\|126509393, gi... - gi\|153820058\|ref\|ZP_01972725.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|227014687, gi... - gi\|227119237\|ref\|YP_002821132.1\| hypothetical protein VC395_A0049 [Vibrio cholerae O395], gi\|2270146... gi\|15600826, gi\|... - gi\|9657438\|gb\|AAF95969.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N1696... gi\|11354744 - pir\|\|E82505 conserved hypothetical protein VCA0055 [imported] - Vibrio cholerae (strain N16961 serog... gi\|227010825, gi... - gi\|227811683\|ref\|YP_002811693.1\| hypothetical protein VCM66_A0052 [Vibrio cholerae M66-2], gi\|227010... gi\|121549834, gi... - gi\|121585898\|ref\|ZP_01675691.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215498... gi\|125619809, gi... - gi\|254850322\|ref\|ZP_05239672.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254846027\|... gi\|124116282, gi... - gi\|153212769\|ref\|ZP_01948405.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124116282\|...	428.0	[0..3]	[315..5]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKFNPQRIQ IGISACLLGE KVRFDGGHKN SSYCNQEIAS FFDYVPICPE MAIGLGAPRK  60
   61 SIRLVRDGEQ IRVQSGDGSL DVTEKLNDFS ERKVEELDFL GGYLLCAKSP TCGMERVTEY 120
  121 KIGTNNGSKS GIGVFARKLM ERYPHLPVEE EGRLHDMVL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.0
Match:	PF04463.3
Description:	No description for PF04463.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RENFFTRVYA YHDWHKMRHE GLTKHKLVKF HSRYKYLLMA HSPKWYRELG PIVANIEDIE  60
   61 ATADCYFTGF MAALKINATR KNHTSTLQHI QGYFKKHLTK EQKLELSEMI MKYRQGLLPL 120
  121 LVPITLINHY LRQFPTPYIE DQVYLNPHPE ELKLRYAY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.431798
Match:	PF08349.2
Description:	No description for PF08349.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits