YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3228
Organism:	Shewanella oneidensis
Length:	553 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3228.

Description	E-value	Query Range	Subject Range
gi\|150959298, gi... - gi\|94415965\|ref\|ZP_01295797.1\| hypothetical protein PaerP_01002294 [Pseudomonas aeruginosa PA7], gi\|...	562.0	[0..12]	[552..28]
FLIF_PSEAE - Flagellar M-ring protein OS=Pseudomonas aeruginosa GN=fliF PE=3 SV=2 gi\|116049030, gi... - gi\|32041106\|ref\|ZP_00138689.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei... FLIF_PSEAE - Flagellar M-ring protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12... gi\|107100552 - gi\|107100552\|ref\|ZP_01364470.1\| hypothetical protein PaerPA_01001577 [Pseudomonas aeruginosa PACS2]	561.0	[0..12]	[552..28]
gi\|254239470, gi... - gi\|84328573\|ref\|ZP_00976577.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei...	561.0	[0..12]	[552..28]
gi\|46311080, gi\|... - gi\|78067882\|ref\|YP_370651.1\| flagellar MS-ring protein [Burkholderia sp. 383], gi\|77968627\|gb\|ABB100...	560.0	[0..13]	[551..45]
gi\|68343329, gi\|... - gi\|70729030\|ref\|YP_258764.1\| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5], gi\|68343329\|g...	556.0	[0..12]	[552..26]
gi\|91785611, gi\|... - gi\|91785611\|ref\|YP_560817.1\| flagellar MS-ring protein [Burkholderia xenovorans LB400], gi\|91689565\|...	554.0	[0..14]	[551..52]
gi\|148546737, gi... - gi\|82738784\|ref\|ZP_00901609.1\| Flagellar FliF M-ring protein [Pseudomonas putida F1], gi\|82714176\|gb...	550.0	[0..13]	[552..27]
gi\|26991058, gi\|... - gi\|26991058\|ref\|NP_746483.1\| flagellar MS-ring protein [Pseudomonas putida KT2440], gi\|24986091\|gb\|A...	550.0	[0..13]	[552..27]
gi\|896313 - gi\|896313\|gb\|AAB06801.1\| flagellar MS ring	548.0	[0..12]	[552..28]
gi\|95111808 - gi\|95111808\|emb\|CAK16532.1\| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48] gi\|104782821, gi... - gi\|95111808\|emb\|CAK16532.1\| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48], ...	546.0	[0..13]	[552..27]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQGVQQEHK SGVLGNLGGV DMMRQITMIL ALAICLALAV FVMIWAQEPE YRPLGKMETQ  60
   61 EMVQVLDVLD KNKIKYQIDV DVVKVPEDKY QEVKMMLSRA GIDSAATSKQ DFLTQDSGFG 120
  121 VSQRMEQARL KHSQEENLAR AIEQLQSVSR AKVILALPKE NVFARNTAQP SATVVINTRR 180
  181 GGLGQGEVDA IVDIVASAVQ GLEPSRVTVT DSNGRLLNSG SQDGVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	1yj7A
Description:	Crystal structure of enteropathogenic E.coli (EPEC) type III secretion system protein EscJ
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [228-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RARRELELVQ QKETEYRTKI DSILSPILGH DNFTSQVDVS MDFTAVEQTA KRFNPDLPSL  60
   61 RSEMTVENNS TGGSTGGIPG ALSNQPPMES NIPQEAATAA TESVAAGNSH REATRNFELD 120
  121 TTISHTRQQI GVVRRVSVSV AVDFKPGAAG ENGQVARVAR TEQELTNIRR LLEGAVGFSA 180
  181 QRGDVLEVVT VPF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	79.657577
Match:	PF08345.2
Description:	No description for PF08345.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [421-553]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLVEDVPA PELWEQPWFW RAVKLGVGAL VILVLILAVV RPMLKRLIYP DRVNMPEDGR  60
   61 LGNELAEIED QYAADTLGML NTKEAEYSYA DDGSILIPNL HKDDDMIKAI RALVANEPEL 120
  121 STQVVKNWLQ DNG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits