YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3226
Organism:	Shewanella oneidensis
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3226.

Description	E-value	Query Range	Subject Range
gi\|78505698, gi\|... - gi\|78686534\|ref\|ZP_00851300.1\| flagellar assembly protein FliH [Shewanella sp. ANA-3], gi\|78505698\|g...	199.0	[0..14]	[316..13]
gi\|82495241, gi\|... - gi\|82495241\|ref\|ZP_00880818.1\| flagellar assembly protein FliH [Shewanella sp. MR-4], gi\|82406744\|gb...	188.0	[0..14]	[316..13]
gi\|113888299, gi... - gi\|114046857\|ref\|YP_737407.1\| flagellar assembly protein H [Shewanella sp. MR-7], gi\|113888299\|gb\|AB...	188.0	[0..14]	[316..13]
gi\|82720842, gi\|... - gi\|82741826\|ref\|ZP_00904538.1\| flagellar assembly protein FliH [Shewanella sp. W3-18-1], gi\|82720842...	179.0	[0..1]	[316..1]
gi\|146293670, gi... - gi\|77814136\|ref\|ZP_00813402.1\| Flagellar assembly protein FliH [Shewanella putrefaciens CN-32], gi\|7...	178.0	[0..1]	[316..1]
gi\|27365282, gi\|... - gi\|27365282\|ref\|NP_760810.1\| flagellar assembly protein H [Vibrio vulnificus CMCP6], gi\|27361429\|gb\|... gi\|37199412, gi\|... - gi\|37680663\|ref\|NP_935272.1\| flagellar assembly protein H [Vibrio vulnificus YJ016], gi\|37199412\|dbj...	177.0	[0..21]	[269..15]
gi\|113909426, gi... - gi\|160876175\|ref\|YP_001555491.1\| flagellar assembly protein H [Shewanella baltica OS195], gi\|1608616...	173.0	[0..1]	[316..1]
gi\|126175126, gi... - gi\|68541527\|ref\|ZP_00581270.1\| Flagellar assembly protein FliH [Shewanella baltica OS155], gi\|685207...	173.0	[0..1]	[316..1]
gi\|121630404, gi... - gi\|121727159\|ref\|ZP_01680326.1\| flagellar assembly protein FliH, putative [Vibrio cholerae V52], gi\|... gi\|227010144, gi... - gi\|227082256\|ref\|YP_002810807.1\| putative flagellar assembly protein FliH [Vibrio cholerae M66-2], g... gi\|125618019 - gi\|125618019\|gb\|EAZ46566.1\| flagellar assembly protein FliH, putative [Vibrio cholerae MO10] gi\|153223617, gi... - gi\|153223617\|ref\|ZP_01953971.1\| flagellar assembly protein FliH, putative [Vibrio cholerae MAK 757],... gi\|126510487, gi... - gi\|153818992\|ref\|ZP_01971659.1\| flagellar assembly protein FliH, putative [Vibrio cholerae NCTC 8457... gi\|254226363, gi... - gi\|254226363\|ref\|ZP_04919952.1\| flagellar assembly protein FliH, putative [Vibrio cholerae V51], gi\|... gi\|150422698, gi... - gi\|254291368\|ref\|ZP_04962161.1\| flagellar assembly protein FliH, putative [Vibrio cholerae AM-19226]... gi\|153828641, gi... - gi\|153828641\|ref\|ZP_01981308.1\| putative flagellar assembly protein FliH [Vibrio cholerae 623-39], g... gi\|153822890, gi... - gi\|153822890\|ref\|ZP_01975557.1\| flagellar assembly protein FliH, putative [Vibrio cholerae B33], gi\|... gi\|227014027, gi... - gi\|227118577\|ref\|YP_002820473.1\| putative flagellar assembly protein FliH [Vibrio cholerae O395], gi... gi\|9656682, gi\|1... - gi\|9656682\|gb\|AAF95276.1\| flagellar assembly protein FliH, putative [Vibrio cholerae O1 biovar El To... gi\|11355892 - pir\|\|C82114 probable flagellar assembly protein FliH VC2131 [imported] - Vibrio cholerae (strain N16...	172.0	[0..21]	[269..19]
gi\|91191632, gi\|... - gi\|91223546\|ref\|ZP_01258811.1\| flagellar assembly protein H [Vibrio alginolyticus 12G01], gi\|9119163...	170.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSNRSDNQ LDDKLSHRVV SDAEIEFSHW QLPDVTETED VSISNLFGYS AQQAPKAVAV  60
   61 ETVAPPTMAE IEDIRAQAEE EGFNEGKTQG HIEGLEQGRL EGLEQGHKEG FTQGHEQGLE 120
  121 TGLAEAKALL SRFEGLLCQF EKPLQLLDGD IEHTLMSLTM ALAKSVIGHE LKTHPEQILS 180
  181 ALRLGVESLP IKEQTVNLRM HPDDVTLVET LYSSTQLTRN QWQLEADPSL TAGDCIISSQ 240
  241 RSLVDLTLSS RIDAVFESLR NQQSHLALQQ QQRQAALDEE NAAKIVPESI KDADELVAQY 300
  301 QGDGEQDAQS PPSTAE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits