YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3213
Organism:	Shewanella oneidensis
Length:	699 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3213.

Description	E-value	Query Range	Subject Range
gi\|37525819, gi\|... - gi\|37525819\|ref\|NP_929163.1\| flagellar biosynthesis protein FlhA [Photorhabdus luminescens subsp. la...	919.0	[0..2]	[698..3]
gi\|78510293, gi\|... - gi\|78690264\|ref\|ZP_00854913.1\| Flagellar biosynthesis protein FlhA [Shewanella sp. MR-7], gi\|7851029... gi\|113969639, gi... - gi\|82495253\|ref\|ZP_00880830.1\| Flagellar biosynthesis protein FlhA [Shewanella sp. MR-4], gi\|8240675...	910.0	[0..1]	[699..1]
gi\|78505686, gi\|... - gi\|78686522\|ref\|ZP_00851288.1\| Flagellar biosynthesis protein FlhA [Shewanella sp. ANA-3], gi\|785056...	909.0	[0..1]	[699..1]
gi\|73539438, gi\|... - gi\|73539438\|ref\|YP_299805.1\| flagellar biosynthesis protein FlhA [Ralstonia eutropha JMP134], gi\|721...	909.0	[0..3]	[698..4]
gi\|125998319, gi... - gi\|68541539\|ref\|ZP_00581282.1\| Flagellar biosynthesis protein FlhA [Shewanella baltica OS155], gi\|68... gi\|149113772, gi... - gi\|217972630\|ref\|YP_002357381.1\| flagellar biosynthesis protein FlhA [Shewanella baltica OS223], gi\|...	906.0	[0..1]	[699..1]
gi\|4322011 - gi\|4322011\|gb\|AAD15914.1\| polar flagellar assembly protein FlhA [Vibrio parahaemolyticus]	905.0	[0..9]	[698..10]
gi\|113528707, gi... - gi\|116694208\|ref\|YP_728419.1\| flagellar biosynthesis protein FlhA [Ralstonia eutropha H16], gi\|11352...	905.0	[0..3]	[698..4]
gi\|113948291, gi... - gi\|160876163\|ref\|YP_001555479.1\| flagellar biosynthesis protein FlhA [Shewanella baltica OS195], gi\|...	905.0	[0..1]	[699..1]
gi\|49611157, gi\|... - gi\|50120631\|ref\|YP_049798.1\| flagellar biosynthesis protein FlhA [Pectobacterium atrosepticum SCRI10...	904.0	[0..2]	[699..3]
gi\|82720403, gi\|... - gi\|82742261\|ref\|ZP_00904960.1\| Flagellar biosynthesis protein FlhA [Shewanella sp. W3-18-1], gi\|8272... gi\|77810869, gi\|... - gi\|77814124\|ref\|ZP_00813390.1\| Flagellar biosynthesis protein FlhA [Shewanella putrefaciens CN-32], ... gi\|124509997, gi... - gi\|124546508\|ref\|ZP_01705584.1\| flagellar biosynthesis protein FlhA [Shewanella putrefaciens 200], g...	903.0	[0..1]	[699..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKATLGQV KQLKLSSFKG IGTPLLVLAA LAMIVLPIPP FLLDILFSFN IALALVVLLV  60
   61 AIYTDRPLDF AAFPTVLLVA TLLRLALNVA STRVVLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGHNGGDAAG KVIEAFGSVV IGGNYAVGVV VFIILIIINF AVVTKGAGRI AEVSARFTLD  60
   61 AMPGKQMAID ADLNAGIINQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [178-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQARTRRAEV TREADFYGAM DGASKFVKGD AIAGIMILVI NILGGFIIGI VQHGLTFAQA  60
   61 AEIYTLLTIG DGLVAQIPGL LLSIAAALMV TRQNESGDMG QMLMSQMFDS HKSLGIAAGV 120
  121 LFVMGIVPGM PHMAFLSFAV MTGGAAYFVF KRNEAKRAKA LEQVKTGP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [346-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TERTEREPKE LSWDDVHHVD TIGLEVGYRL IPLVDKGQGG ELLSRIKGVR KKLSQELGFL  60
   61 VPAVHIRDNL DLSPNAYRIS LMGVVVGEAD IRHDCELAIN PGQVYGKLDG IETRDPAFGL 120
  121 EAVWIAPELR EHAQTLGYTV VDAATVVATH ISQILTNNAA KLLGYEEAQQ LMDMLAKHSP 180
  181 KLVDGFIPDV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.700	0.170	protein secretion	c.23.1	CheY-like
View	Download	0.607	0.148	protein secretion	c.52.1	Restriction endonuclease-like
View	Download	0.621	0.017	protein secretion	c.23.4	Succinyl-CoA synthetase domains
View	Download	0.559	0.005	protein secretion	c.12.1	Ribosomal proteins L15p and L18e
View	Download	0.634	N/A	N/A	c.23.1	CheY-like

Predicted Domain #5

Region A:
Residues: [536-619]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLGNVVKVM QNLLNEGVSV RDLRTIVQTL LEYGTKSNDT EVLTAAVRIA LKRMIVQEIS  60
   61 GPELEIPVIT LAPELEQMLH QSMQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [620-699]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATGGDGPNIE PGLAERMQQS LADAAQKQEM VGQPAILLTS GMLRATLSRF VKYTIPNLRV  60
   61 ISYQEIPDEK QIRIVSAVGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits