YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3112
Organism:	Shewanella oneidensis
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3112.

Description	E-value	Query Range	Subject Range
gi\|113969725, gi... - gi\|113969725\|ref\|YP_733518.1\| preprotein translocase subunit YajC [Shewanella sp. MR-4], gi\|11388440... gi\|78691799, gi\|... - gi\|78691799\|ref\|ZP_00856393.1\| YajC [Shewanella sp. MR-7], gi\|78508802\|gb\|EAP22230.1\| YajC [Shewanel...	153.0	[0..1]	[110..1]
gi\|124547490, gi... - gi\|124547490\|ref\|ZP_01706375.1\| preprotein translocase, YajC subunit [Shewanella putrefaciens 200], ... gi\|120598343, gi... - gi\|120598343\|ref\|YP_962917.1\| preprotein translocase subunit YajC [Shewanella sp. W3-18-1], gi\|12055... gi\|77808773, gi\|... - gi\|77816278\|ref\|ZP_00815477.1\| YajC [Shewanella putrefaciens CN-32], gi\|77808773\|gb\|EAO93194.1\| YajC...	152.0	[0..1]	[110..1]
gi\|160875991, gi... - gi\|160875991\|ref\|YP_001555307.1\| preprotein translocase subunit YajC [Shewanella baltica OS195], gi\|... gi\|153001322, gi... - gi\|153001322\|ref\|YP_001367003.1\| preprotein translocase subunit YajC [Shewanella baltica OS185], gi\|... gi\|146862332, gi... - gi\|217972748\|ref\|YP_002357499.1\| preprotein translocase subunit YajC [Shewanella baltica OS223], gi\|... gi\|68518913, gi\|... - gi\|68543382\|ref\|ZP_00583089.1\| YajC [Shewanella baltica OS155], gi\|68518913\|gb\|EAN42465.1\| YajC [She...	150.0	[0..1]	[110..1]
gi\|134137951, gi... - gi\|67547644\|ref\|ZP_00425545.1\| YajC [Burkholderia vietnamiensis G4], gi\|67531079\|gb\|EAM27903.1\| YajC...	145.0	[0..2]	[110..3]
gi\|90324329, gi\|... - gi\|90414613\|ref\|ZP_01222586.1\| preprotein translocase subunit YajC [Photobacterium profundum 3TCK], ...	144.0	[0..1]	[110..3]
gi\|59480676, gi\|... - gi\|59712575\|ref\|YP_205351.1\| preprotein translocase subunit YajC [Vibrio fischeri ES114], gi\|5948067...	144.0	[0..2]	[110..4]
gi\|91781854, gi\|... - gi\|91781854\|ref\|YP_557060.1\| preprotein translocase subunit YajC [Burkholderia xenovorans LB400], gi... gi\|117991282, gi... - gi\|118038619\|ref\|ZP_01510023.1\| preprotein translocase, YajC subunit [Burkholderia phytofirmans PsJN...	144.0	[0..2]	[110..14]
gi\|171992214, gi... - gi\|172059697\|ref\|YP_001807349.1\| preprotein translocase subunit YajC [Burkholderia ambifaria MC40-6]... gi\|118713625, gi... - gi\|170732042\|ref\|YP_001763989.1\| preprotein translocase subunit YajC [Burkholderia cenocepacia MC0-3... gi\|46316116, gi\|... - gi\|78065285\|ref\|YP_368054.1\| preprotein translocase subunit YajC [Burkholderia sp. 383], gi\|77966030... gi\|194557266, gi... - gi\|84356832\|ref\|ZP_00981666.1\| COG1862: Preprotein translocase subunit YajC [Burkholderia cenocepaci... gi\|116646833, gi... - gi\|67665893\|ref\|ZP_00463150.1\| YajC [Burkholderia cenocepacia HI2424], gi\|67100573\|gb\|EAM17726.1\| Ya... gi\|171094702, gi... - gi\|171320043\|ref\|ZP_02909113.1\| preprotein translocase, YajC subunit [Burkholderia ambifaria MEX-5],... gi\|67658219, gi\|... - gi\|67658219\|ref\|ZP_00455592.1\| YajC [Burkholderia cenocepacia AU 1054], gi\|67094060\|gb\|EAM11596.1\| Y... gi\|206561643, gi... - gi\|206561643\|ref\|YP_002232408.1\| preprotein translocase subunit YajC [Burkholderia cenocepacia J2315... gi\|74017111, gi\|... - gi\|74017111\|ref\|ZP_00687736.1\| YajC [Burkholderia ambifaria AMMD], gi\|72610582\|gb\|EAO46529.1\| YajC [... gi\|170131962, gi... - gi\|170703129\|ref\|ZP_02893945.1\| preprotein translocase, YajC subunit [Burkholderia ambifaria IOP40-1...	143.0	[0..2]	[110..3]
gi\|89072681, gi\|... - gi\|89072681\|ref\|ZP_01159246.1\| preprotein translocase subunit YajC [Photobacterium sp. SKA34], gi\|89...	143.0	[0..2]	[110..4]
gi\|90579385, gi\|... - gi\|90579385\|ref\|ZP_01235195.1\| preprotein translocase subunit YajC [Vibrio angustum S14], gi\|9044021...	143.0	[0..2]	[110..4]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFISNAYANA AGTPQGGGTM ELIFMLVIFG LIFYFMIFRP QSKRVKEHKN LMSSLGKGDE  60
   61 VLTSGGILGK IAKISDDNDY VLLSLNDTTQ ITIKKDYIAA VLPKGSIQSL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.958607
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits