YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3107
Organism:	Shewanella oneidensis
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3107.

Description	E-value	Query Range	Subject Range
gi\|83652220, gi\|... - gi\|83718395\|ref\|YP_440643.1\| YaeQ family protein [Burkholderia thailandensis E264], gi\|83652220\|gb\|A...	281.0	[0..1]	[181..68]
gi\|115283246, gi... - gi\|74020326\|ref\|ZP_00690925.1\| YaeQ [Burkholderia ambifaria AMMD], gi\|72606976\|gb\|EAO42949.1\| YaeQ [...	278.0	[0..1]	[178..24]
gi\|46310688, gi\|... - gi\|78067979\|ref\|YP_370748.1\| YaeQ family protein [Burkholderia sp. 383], gi\|77968724\|gb\|ABB10104.1\| ...	277.0	[0..1]	[178..1]
gi\|51590578, gi\|... - gi\|51597296\|ref\|YP_071487.1\| hypothetical protein YPTB2981 [Yersinia pseudotuberculosis IP 32953], g... gi\|45437417, gi\|... - gi\|45442552\|ref\|NP_994091.1\| hypothetical protein YP_2784 [Yersinia pestis biovar Microtus str. 9100... gi\|22126988, gi\|... - gi\|22126988\|ref\|NP_670411.1\| hypothetical protein y3112 [Yersinia pestis KIM], gi\|21960033\|gb\|AAM866... Q667L1\|Q667L1_YERPS - Putative uncharacterized protein precursor - Yersinia pseudotuberculosis	276.0	[0..1]	[180..23]
gi\|82529761, gi\|... - gi\|82529761\|ref\|ZP_00889003.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|134247281, gi... - gi\|134281614\|ref\|ZP_01768322.1\| conserved hypothetical protein [Burkholderia pseudomallei 305], gi\|1... gi\|194316762, gi... - gi\|254174872\|ref\|ZP_04881533.1\| conserved hypothetical protein [Burkholderia mallei ATCC 10399], gi\|... gi\|217424001, gi... - gi\|217424001\|ref\|ZP_03455501.1\| conserved hypothetical protein [Burkholderia pseudomallei 576], gi\|2... gi\|167892229 - gi\|167892229\|ref\|ZP_02479631.1\| hypothetical protein Bpse7_00600 [Burkholderia pseudomallei 7894] gi\|167916986 - gi\|167916986\|ref\|ZP_02504077.1\| hypothetical protein BpseBC_00460 [Burkholderia pseudomallei BCC215] gi\|167822147 - gi\|167822147\|ref\|ZP_02453618.1\| hypothetical protein Bpseu9_00620 [Burkholderia pseudomallei 9] gi\|52208152, gi\|... - gi\|53717738\|ref\|YP_106724.1\| hypothetical protein BPSL0098 [Burkholderia pseudomallei K96243], gi\|52... gi\|167843750 - gi\|167843750\|ref\|ZP_02469258.1\| hypothetical protein BpseB_00570 [Burkholderia pseudomallei B7210] gi\|53724649, gi\|... - gi\|53724649\|ref\|YP_101957.1\| hypothetical protein BMA0113 [Burkholderia mallei ATCC 23344], gi\|52428... gi\|167001167, gi... - gi\|243062997\|gb\|EES45183.1\| conserved hypothetical protein [Burkholderia mallei PRL-20], gi\|16700116... gi\|85066500 - gi\|85066500\|ref\|ZP_01027353.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|254359600, gi... - gi\|87313556\|ref\|ZP_01094649.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|84521761, gi\|... - gi\|84521761\|ref\|ZP_01008897.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67758949, gi\|... - gi\|67758949\|ref\|ZP_00497697.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|76808593, gi\|... - gi\|76808593\|ref\|YP_331736.1\| YaeQ protein [Burkholderia pseudomallei 1710b], gi\|76578046\|gb\|ABA47521... gi\|124293475, gi... - gi\|124385455\|ref\|YP_001028211.1\| hypothetical protein BMA10229_A2247 [Burkholderia mallei NCTC 10229... gi\|100913801, gi... - gi\|67634183\|ref\|ZP_00433168.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67641035, gi\|... - gi\|67641035\|ref\|ZP_00439823.1\| YaeQ protein [Burkholderia mallei GB8 horse 4], gi\|238521883\|gb\|EEP85... gi\|194523956, gi... - gi\|83618571\|ref\|ZP_00929028.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|147752945, gi... - gi\|83623696\|ref\|ZP_00933960.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67680722, gi\|... - gi\|90290584\|ref\|ZP_01210236.1\| hypothetical protein Bpse17_02004744 [Burkholderia pseudomallei 1710a... gi\|226193079, gi... - gi\|226193079\|ref\|ZP_03788689.1\| conserved hypothetical protein [Burkholderia pseudomallei Pakistan 9... gi\|126441653, gi... - gi\|67735134\|ref\|ZP_00486167.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|126243748, gi... - gi\|67644769\|ref\|ZP_00443136.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67670458, gi\|... - gi\|99909034\|ref\|ZP_01316624.1\| hypothetical protein Bpse1_03004049 [Burkholderia pseudomallei 1655],...	276.0	[0..1]	[181..1]
gi\|237810310, gi... - gi\|237810310\|ref\|YP_002894761.1\| YaeQ protein [Burkholderia pseudomallei MSHR346], gi\|237504677\|gb\|A... gi\|167736528 - gi\|167736528\|ref\|ZP_02409302.1\| hypothetical protein Bpse14_00615 [Burkholderia pseudomallei 14] gi\|167908955 - gi\|167908955\|ref\|ZP_02496046.1\| hypothetical protein Bpse112_00560 [Burkholderia pseudomallei 112] gi\|167813602 - gi\|167813602\|ref\|ZP_02445282.1\| hypothetical protein Bpse9_00600 [Burkholderia pseudomallei 91] gi\|167900728 - gi\|167900728\|ref\|ZP_02487933.1\| hypothetical protein BpseN_00535 [Burkholderia pseudomallei NCTC 131... gi\|100232512, gi... - gi\|83677289\|ref\|ZP_00939042.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|194512789, gi... - gi\|67752372\|ref\|ZP_00491360.1\| COG4681: Uncharacterized protein conserved in bacteria [Burkholderia ...	275.0	[0..1]	[181..1]
gi\|33596104 - gi\|33596104\|ref\|NP_883747.1\| hypothetical protein BPP1448 [Bordetella parapertussis 12822] gi\|33575937, gi\|... - gi\|33601501\|ref\|NP_889061.1\| hypothetical protein BB2522 [Bordetella bronchiseptica RB50], gi\|335759... gi\|33573107 - gi\|33573107\|emb\|CAE36750.1\| conserved hypothetical protein [Bordetella parapertussis]	275.0	[0..1]	[178..1]
gi\|134297391, gi... - gi\|67549766\|ref\|ZP_00427614.1\| YaeQ [Burkholderia vietnamiensis G4], gi\|67528916\|gb\|EAM25807.1\| YaeQ...	275.0	[0..1]	[178..1]
gi\|68555499, gi\|... - gi\|94309758\|ref\|YP_582968.1\| YaeQ [Ralstonia metallidurans CH34], gi\|93353610\|gb\|ABF07699.1\| YaeQ [R...	275.0	[0..1]	[178..1]
gi\|91785797, gi\|... - gi\|91785797\|ref\|YP_561003.1\| hypothetical protein Bxe_A4480 [Burkholderia xenovorans LB400], gi\|9168...	274.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKATVFKV NLQIADMDRG YYQDHQLTLA QHPSETDGRM MVRLLAFILN ASETLSFTKG  60
   61 LCVDDEPELW DKSLSGEVDL WIEFGQADEK WLRKASGRAK AVQLFTYGGR SVPIWWKQNQ 120
  121 AALERYKNLK VWNIAEESVT AMEALVSRTM SLQVSISEGQ VWLSDNEHSV LIEPEILKDY 180
  181 Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	2g3wA
Description:	No description for 2g3wA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.050018926486278	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: