YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3004
Organism:	Shewanella oneidensis
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3004.

Description	E-value	Query Range	Subject Range
gi\|205326984, gi... - gi\|205326984\|gb\|EDZ13748.1\| putative DNA methyltransferase [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=STM14_2467] [protein=putative DNA methyl transferase] [protein_id=YP_005238013.1] [location=co... gi\|23379235, gi\|... - gi\|23505488\|ref\|NP_700417.1\| putative DNA methyltransferase [Salmonella phage ST64B], gi\|23379235\|gb...	457.0	[0..3]	[316..1]
gi\|75255105 - gi\|75255105\|ref\|ZP_00726997.1\| hypothetical protein EcolE2_01004753 [Escherichia coli E22]	329.0	[0..3]	[210..85]
gi\|19549028, gi\|... - gi\|19549028\|ref\|NP_599073.1\| DNA adenine methylase [Enterobacteria phage SfV], gi\|19483772\|gb\|AAL894...	328.0	[0..3]	[210..1]
gi\|237706744, gi... - gi\|237706744\|ref\|ZP_04537225.1\| bacteriophage V DNA adenine methylase [Escherichia sp. 3_2_53FAA], g... gi\|91211999, gi\|... - gi\|91211999\|ref\|YP_541985.1\| bacteriophage V DNA adenine methylase [Escherichia coli UTI89], gi\|9107...	328.0	[0..3]	[210..1]
gi\|194415106, gi... - gi\|75211943\|ref\|ZP_00711998.1\| hypothetical protein EcolB_01000943 [Escherichia coli B171], gi\|19442... gi\|194437233, gi... - gi\|83587152\|ref\|ZP_00925781.1\| hypothetical protein Ecol1_01001539 [Escherichia coli 101-1], gi\|1944... gi\|91214047, gi\|... - gi\|91214047\|ref\|YP_544033.1\| DNA adenine methylase [Escherichia coli UTI89], gi\|91075621\|gb\|ABE10502... gi\|191174681, gi... - gi\|191174681\|ref\|ZP_03036150.1\| phage N-6-adenine-methyltransferase [Escherichia coli F11], gi\|19090... gi\|194713247, gi... - gi\|194737745\|ref\|YP_002117134.1\| phage N-6-adenine-methyltransferase [Salmonella enterica subsp. ent...	327.0	[0..3]	[210..1]
gi\|187429040, gi... - gi\|75175717\|ref\|ZP_00695917.1\| hypothetical protein SboyB_01004182 [Shigella boydii BS512], gi\|18773...	326.0	[0..3]	[210..1]
gi\|115514002, gi... - gi\|117624878\|ref\|YP_853791.1\| DNA adenine methylase [Escherichia coli APEC O1], gi\|115514002\|gb\|ABJ0...	326.0	[0..3]	[210..1]
gi\|62179772, gi\|... - gi\|62179772\|ref\|YP_216189.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Chol...	310.0	[0..3]	[210..1]
Q66BH3\|Q66BH3_YERPS - Putative uncharacterized protein yfdM - Yersinia pseudotuberculosis gi\|51589415, gi\|... - gi\|51596133\|ref\|YP_070324.1\| hypothetical protein YPTB1798 [Yersinia pseudotuberculosis IP 32953], g...	264.0	[0..4]	[300..6]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNSQYASA LRELKTKQSH LLKEVGDQWR TPDALYWGIF AKFGPFILDL FSDGDNAKCP  60
   61 RYYTVEDNAL IQDWTKDLAG GKAFANPPYS RSSYEDNQAI TGMRNIIAKS IDERDKGAKF 120
  121 VYLIKSATSE VWWPEDADHV CFIRGRISFD LPDWFVPADK KQEASSAGFA CAIAVFDKTW 180
  181 RGERMSYV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.958607
Match:	PF05869.2
Description:	No description for PF05869.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRDDLLRDGQ VMLNMVAAAA NKKSATYITE TIETRPDIAE PVEPIIEHQV NDQLDIEDQI  60
   61 ARDSTVANSV WPKEVLELVE QAFNDNPNTK TDVRQQMLCE RVNQRLLDNV LKKDIIAEVN 120
  121 NMLDRCERVE DAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.588	0.225	site-specific DNA-methyltransferase (adenine-specific) activity	a.133.1	Phospholipase A2, PLA2
View	Download	0.694	0.173	site-specific DNA-methyltransferase (adenine-specific) activity	a.118.1	ARM repeat
View	Download	0.624	0.036	site-specific DNA-methyltransferase (adenine-specific) activity	a.64.1	Saposin
View	Download	0.485	N/A	N/A	a.133.1	Phospholipase A2, PLA2
View	Download	0.477	N/A	N/A	a.133.1	Phospholipase A2, PLA2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits