YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2513
Organism:	Shewanella oneidensis
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2513.

Description	E-value	Query Range	Subject Range
gi\|37679371, gi\|... - gi\|37679371\|ref\|NP_933980.1\| SoxR-reducing system protein RsxE [Vibrio vulnificus YJ016], gi\|3719811...	288.0	[0..1]	[230..5]
RNFE_VIBVU - Electron transport complex protein rnfE OS=Vibrio vulnificus GN=rnfE PE=3 SV=1 ETCE_VIBVY - Electron transport complex subunit E OS=Vibrio vulnificus (strain YJ016) GN=VV1187 PE=3 SV=2 ETCE_VIBVU - Electron transport complex subunit E OS=Vibrio vulnificus (strain CMCP6) GN=VV1_3098 PE=3 SV=1	287.0	[0..1]	[230..1]
gi\|54309726, gi\|... - gi\|54309726\|ref\|YP_130746.1\| electron transport complex RsxE subunit [Photobacterium profundum SS9],...	282.0	[0..1]	[229..1]
gi\|90579153, gi\|... - gi\|90579153\|ref\|ZP_01234963.1\| NADH-ubiquinone oxidoreductase [Vibrio angustum S14], gi\|90439986\|gb\|...	281.0	[0..1]	[231..1]
ETCE_SHESR - Electron transport complex subunit E OS=Shewanella sp. (strain MR-7) GN=Shewmr7_1906 PE=3 SV=1 ETCE_SHESM - Electron transport complex subunit E OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2069 PE=3 SV=1	280.0	[0..1]	[232..1]
ETCE_VIBCH - Electron transport complex subunit E OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inab... RNFE_VIBCH - Electron transport complex protein rnfE OS=Vibrio cholerae GN=rnfE PE=3 SV=1 gi\|75829853, gi\|... - gi\|75829853\|ref\|ZP_00759143.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr... ETCE_VIBCM - Electron transport complex subunit E OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_0968 PE=... gi\|153823437, gi... - gi\|153823437\|ref\|ZP_01976104.1\| RnfE-related protein [Vibrio cholerae B33], gi\|126519046\|gb\|EAZ76269...	280.0	[0..1]	[231..1]
gi\|197750933, gi... - gi\|254291765\|ref\|ZP_04962551.1\| RnfE-related protein [Vibrio cholerae AM-19226], gi\|197750933\|ref\|YP... gi\|148874988, gi... - gi\|153829528\|ref\|ZP_01982195.1\| RnfE-related protein [Vibrio cholerae 623-39], gi\|148874988\|gb\|EDL73... gi\|116214701, gi... - gi\|75821322\|ref\|ZP_00751262.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr... gi\|153824932, gi... - gi\|153824932\|ref\|ZP_01977599.1\| RnfE-related protein [Vibrio cholerae MZO-2], gi\|149741444\|gb\|EDM554... ETCE_VIBC3 - Electron transport complex subunit E OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical O... gi\|121729987, gi... - gi\|75814532\|ref\|ZP_00745108.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr... tr\|D7H7L4\|D7H7L4... - Electron transport complex subunit E OS=Vibrio cholerae GN=DN30_1928 PE=3 SV=1, Electron transport c...	279.0	[0..1]	[231..1]
ETCE_SHESA - Electron transport complex subunit E OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2173 PE=3 SV=1	279.0	[0..1]	[232..1]
RNFE_VIBPA - Electron transport complex protein rnfE OS=Vibrio parahaemolyticus GN=rnfE PE=3 SV=1 ETCE_VIBPA - Electron transport complex subunit E OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)...	279.0	[0..1]	[230..1]
gi\|194538319, gi... - gi\|75853688\|ref\|ZP_00761471.1\| COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Vibr...	278.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNYREIAWQ GLWKNNPGLV QRLGLCPLLA VTTTLTNALG LGIATMLVLI GSNVLISLVR  60
   61 DYVPKEIRIP VFVMIIAALV TAVQLLVNAY AYGLYMSLGI FLPLIVTNCI IIGRAEAFAS 120
  121 RNNAFSSAFD GLMMGLGFTL VLVLLGATRE ILGQGTLFDG ADQLLGPWAK ALTFQVWQVD 180
  181 TSFLLAMLPP GAFIVMGLLI ALKNVIDKKL RERQPETAVQ PSVARARITK VS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.173925
Match:	PF02508.5
Description:	No description for PF02508.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits