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View Structure Prediction Details

Protein: SO2436
Organism: Shewanella oneidensis
Length: 330 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2436.

Description E-value Query
Range		 Subject
Range
CMOB_SHEB9 - tRNA U34 carboxymethyltransferase OS=Shewanella baltica (strain OS195) GN=cmoB PE=3 SV=1
CMOB_SHEB2 - tRNA U34 carboxymethyltransferase OS=Shewanella baltica (strain OS223) GN=cmoB PE=3 SV=1
CMOB_SHEB8 - tRNA U34 carboxymethyltransferase OS=Shewanella baltica (strain OS185) GN=cmoB PE=3 SV=1
 248.0 [0..1] [329..1]
CMOB_SHEB5 - tRNA U34 carboxymethyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=cmoB PE=3 ...
 247.0 [0..1] [329..1]
CMOB_SHELP - tRNA U34 carboxymethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=cmoB PE=3 S...
 245.0 [0..1] [329..1]
CMOB_SHESM - tRNA U34 carboxymethyltransferase OS=Shewanella sp. (strain MR-4) GN=cmoB PE=3 SV=1
CMOB_SHESA - tRNA U34 carboxymethyltransferase OS=Shewanella sp. (strain ANA-3) GN=cmoB PE=3 SV=1
 245.0 [0..1] [330..1]
CMOB_SHEPC - tRNA U34 carboxymethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=cmoB P...
 245.0 [0..1] [328..1]
YECP_HAEIN, CMOB... - (P44167) Protein HI1351, Uncharacterized protein HI1351 - Haemophilus influenzae, tRNA (mo5U34)-meth...
CMOB_HAEIN - tRNA U34 carboxymethyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ...
 245.0 [0..1] [322..1]
CMOB_SHESR - tRNA U34 carboxymethyltransferase OS=Shewanella sp. (strain MR-7) GN=cmoB PE=3 SV=1
 245.0 [0..1] [330..1]
CMOB_SHESW - tRNA U34 carboxymethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=cmoB PE=3 SV=1
 242.0 [0..1] [328..1]
gi|53732682 - gi|53732682|ref|ZP_00349543.1| COG0500: SAM-dependent methyltransferases [Haemophilus influenzae R28...
 240.0 [0..1] [322..1]
gi|46133430 - gi|46133430|ref|ZP_00203163.1| COG0500: SAM-dependent methyltransferases [Haemophilus influenzae R28...
gi|145639056, gi... - gi|145639056|ref|ZP_01794664.1| ribonuclease G [Haemophilus influenzae PittII], gi|145272028|gb|EDK1...
 240.0 [0..1] [322..1]

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Predicted Domain #1
Region A:
Residues: [1-70] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINFSSFYQQ IADSNLQHWL ETLPAILGKW QREHKHGNLP KWEKVLNKLH YPSPDSVDLV  60
   61 DSVTIGTGEQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.0
Match: 1sqfA
Description: The crystal structure of E. coli Fmu binary complex with S-Adenosylmethionine at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [71-330] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTPGEKEKLE NLLRLFMPWR KGPFHIHGIH IDTEWRSDWK WDRVKPHISP LQNRTVLDVG  60
   61 CGSGYHMWRM LGAGAKRVVG IDPSPLFLCQ FEAVKRLSGE NHPVHLLPLG IEELPPLDAF 120
  121 DTVFSMGVLY HRRSPIDHLL QLRDQLRMGG ELVLETLVID GDENAVLVPQ DRYGKMNNVW 180
  181 FIPSVAALML WLKKCDFTDI RCVDTDVTAL AEQRRTDWMP NESLVEYLDP KDITKTVEGY 240
  241 PAPKRATIIA VKNQPNQDLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.30103
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.25333584501255 bayes_pls_golite062009
transferase activity 0.999964866871553 bayes_pls_golite062009
methyltransferase activity 0.558878917426836 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.557560946446304 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.0605581837493382 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle