YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2435
Organism:	Shewanella oneidensis
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2435.

Description	E-value	Query Range	Subject Range
CMOA_SHELP - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=cmoA...	185.0	[0..1]	[243..1]
CMOA_VIBPA - Carboxy-S-adenosyl-L-methionine synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210... CMOA_VIBPA - tRNA (cmo5U34)-methyltransferase OS=Vibrio parahaemolyticus GN=cmoA PE=3 SV=1 gi\|149748079, gi... - gi\|153838512\|ref\|ZP_01991179.1\| methyltransferase, putative [Vibrio parahaemolyticus AQ3810], gi\|149...	181.0	[0..3]	[243..5]
CMOA_SHEPC - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN...	180.0	[0..1]	[243..1]
gi\|116183205, gi... - gi\|75853618\|ref\|ZP_00761419.1\| COG0500: SAM-dependent methyltransferases [Vibrio sp. Ex25], gi\|11618...	180.0	[0..3]	[243..5]
CMOA_SHESW - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella sp. (strain W3-18-1) GN=cmoA PE=3 SV=1	180.0	[0..1]	[243..1]
CMOA_ACTSZ - Carboxy-S-adenosyl-L-methionine synthase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) G...	179.0	[0..1]	[243..1]
gi\|91228189, gi\|... - gi\|91228189\|ref\|ZP_01262171.1\| hypothetical protein V12G01_20578 [Vibrio alginolyticus 12G01], gi\|91...	179.0	[0..3]	[243..5]
gi\|37199222, gi\|... - gi\|37680474\|ref\|NP_935083.1\| hypothetical protein VV2290 [Vibrio vulnificus YJ016], gi\|37199222\|dbj\|...	178.0	[0..3]	[243..7]
CMOA_SHESM - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella sp. (strain MR-4) GN=cmoA PE=3 SV=1 CMOA_SHESA - Carboxy-S-adenosyl-L-methionine synthase OS=Shewanella sp. (strain ANA-3) GN=cmoA PE=3 SV=2	178.0	[0..1]	[243..1]
gi\|27361632, gi\|... - gi\|27365484\|ref\|NP_761012.1\| hypothetical protein VV1_2154 [Vibrio vulnificus CMCP6], gi\|27361632\|gb...	177.0	[0..3]	[243..7]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNASQDTIYA QVSEHISDFQ FDSRVAGVFS DMIRRSVPGY TQIINTIGDF ADRFVKPNTQ  60
   61 VYDLGCSLGA ATLSIRRQIQ GRDCRIVAVD NSESMVIRCQ ENLNAYVSDT EVELICGDIR 120
  121 DIHIENASLV VLNFTLQFLP PEDRDALIAK IYQGLNPGGL LVLSEKIRFD DAPIQSVLEE 180
  181 LHLDFKRANG YSELEISQKR SALENVMKPD TLSTHQQRLT HQGFSHFSTW FQCFNFASMV 240
  241 AIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1im8A
Description:	Hypothetical protein HI0319 (YecO)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	0.999964866871553	bayes_pls_golite062009
methyltransferase activity	0.558878917426836	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.557560946446304	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.0605581837493382	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: