YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2352
Organism:	Shewanella oneidensis
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2352.

Description	E-value	Query Range	Subject Range
gi\|78508612, gi\|... - gi\|78691993\|ref\|ZP_00856574.1\| bax protein, putative [Shewanella sp. MR-7], gi\|78508612\|gb\|EAP22053....	231.0	[0..1]	[255..16]
gi\|113970355, gi... - gi\|82498356\|ref\|ZP_00883858.1\| bax protein, putative [Shewanella sp. MR-4], gi\|82403658\|gb\|EAP44377.... gi\|78687466, gi\|... - gi\|78687466\|ref\|ZP_00852214.1\| bax protein, putative [Shewanella sp. ANA-3], gi\|78504818\|gb\|EAP18363...	229.0	[0..1]	[254..16]
gi\|82719677, gi\|... - gi\|82742966\|ref\|ZP_00905638.1\| bax protein, putative [Shewanella sp. W3-18-1], gi\|82719677\|gb\|EAP545... gi\|77812854, gi\|... - gi\|77812854\|ref\|ZP_00812137.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella put... gi\|124509826, gi... - gi\|124546774\|ref\|ZP_01705809.1\| bax protein, putative [Shewanella putrefaciens 200], gi\|124509826\|gb...	216.0	[0..1]	[254..16]
gi\|68543431, gi\|... - gi\|68543431\|ref\|ZP_00583136.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Shewanella bal... gi\|160875321, gi... - gi\|160875321\|ref\|YP_001554637.1\| bax protein, putative [Shewanella baltica OS195], gi\|160860843\|gb\|A...	215.0	[0..1]	[255..16]
gi\|89949649, gi\|... - gi\|90020049\|ref\|YP_525876.1\| bax protein, putative [Saccharophagus degradans 2-40], gi\|89949649\|gb\|A...	205.0	[0..5]	[248..17]
gi\|126511543, gi... - gi\|153817916\|ref\|ZP_01970583.1\| bax protein, putative [Vibrio cholerae NCTC 8457], gi\|126511543\|gb\|E... gi\|229607998, gi... - gi\|229607998\|ref\|YP_002878646.1\| hypothetical protein VCD_002916 [Vibrio cholerae MJ-1236], gi\|22937... gi\|125617800 - gi\|125617800\|gb\|EAZ46353.1\| bax protein, putative [Vibrio cholerae MO10] gi\|229518454, gi... - gi\|229518454\|ref\|ZP_04407898.1\| hypothetical protein VCC_002478 [Vibrio cholerae RC9], gi\|229345169\|... gi\|229357218, gi... - gi\|229504995\|ref\|ZP_04394505.1\| hypothetical protein VCF_000201 [Vibrio cholerae BX 330286], gi\|2293... gi\|126518724, gi... - gi\|229511336\|ref\|ZP_04400815.1\| hypothetical protein VCE_002743 [Vibrio cholerae B33], gi\|229351301\|... gi\|227081602, gi... - gi\|227081602\|ref\|YP_002810153.1\| putative bax protein [Vibrio cholerae M66-2], gi\|227009490\|gb\|ACP05... gi\|121547217, gi... - gi\|121590942\|ref\|ZP_01678263.1\| bax protein, putative [Vibrio cholerae 2740-80], gi\|121547217\|gb\|EAX... gi\|9655928, gi\|1... - gi\|9655928\|gb\|AAF94587.1\| bax protein, putative [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1... gi\|153221150, gi... - gi\|153221150\|ref\|ZP_01952185.1\| bax protein, putative [Vibrio cholerae MAK 757], gi\|124119854\|gb\|EAY... gi\|11290219 - pir\|\|H82201 probable bax protein VC1430 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|121628012, gi... - gi\|121730234\|ref\|ZP_01682618.1\| bax protein, putative [Vibrio cholerae V52], gi\|121628012\|gb\|EAX6056...	196.0	[0..1]	[252..13]
gi\|116218846, gi... - gi\|75818034\|ref\|ZP_00748263.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae V51], ...	196.0	[0..1]	[252..12]
gi\|116188743, gi... - gi\|75829847\|ref\|ZP_00759138.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae MO10],... gi\|75814120 - gi\|75814120\|ref\|ZP_00744758.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae V52] tr\|C6YBY9\|C6YBY9... - Putative uncharacterized protein OS=Vibrio cholerae MO10 GN=VchoM_00696 PE=4 SV=1	196.0	[0..1]	[252..12]
gi\|75826807 - gi\|75826807\|ref\|ZP_00756242.1\| COG2992: Uncharacterized FlgJ-related protein [Vibrio cholerae O395]	193.0	[0..1]	[252..12]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILAIFSLRL LLIPTIDEPE SIVTQLENAI DPVTQVPDFS AITDVAEKKR AFFDFLRPIV  60
   61 QQQNAIIASE REFITDMLAI VENGNALSDS QSAQLNQIFD KY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.802	a.1.1	Globin-like

Predicted Domain #2

Region A:
Residues: [103-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYAARNVDAK SLNSLLKRVD IIPESMVLIQ AANESGWGSS RFAREGFNFF GEWCFSNGCG  60
   61 IVPSSRGSGK THEVKIFPSV DASVSSYMRN LNSNTAYNLF RSIRADLRAQ EAELNADQLI 120
  121 YGLVNYSERQ EAYIDELLDM LRHNAKYLVK ADV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits