YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2112
Organism:	Shewanella oneidensis
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2112.

Description	E-value	Query Range	Subject Range
gi\|25351970 - pir\|\|AC3312 LSU ribosomal protein L25P [imported] - Brucella melitensis (strain 16M) gi\|237815928, gi... - gi\|237815928\|ref\|ZP_04594925.1\| ribosomal protein L25, Ctc-form [Brucella abortus str. 2308 A], gi\|2... gi\|17986764, gi\|... - gi\|17986764\|ref\|NP_539398.1\| 50S ribosomal protein L25 [Brucella melitensis 16M], gi\|17982392\|gb\|AAL... gi\|225617140, gi... - gi\|225627977\|ref\|ZP_03786013.1\| ribosomal protein L25, Ctc-form [Brucella ceti str. Cudo], gi\|225617...	144.0	[0..43]	[147..18]
gi\|110806164, gi... - gi\|110806164\|ref\|YP_689684.1\| 50S ribosomal protein L25 [Shigella flexneri 5 str. 8401], gi\|11061571...	144.0	[0..47]	[148..18]
gi\|26248568, gi\|... - gi\|26248568\|ref\|NP_754608.1\| 50S ribosomal protein L25 [Escherichia coli CFT073], gi\|26108973\|gb\|AAN... gi\|91211475, gi\|... - gi\|91211475\|ref\|YP_541461.1\| 50S ribosomal protein L25 [Escherichia coli UTI89], gi\|91073049\|gb\|ABE0...	142.0	[0..47]	[148..26]
gi\|114773564, gi... - gi\|114773564\|ref\|ZP_01450662.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [alpha proteoba... gi\|114773564 - gi\|114773564\|ref\|ZP_01450662.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [alpha proteoba... gi\|221135305 - gi\|221135305\|ref\|ZP_03561608.1\| 50S ribosomal protein L25/general stress protein Ctc [Glaciecola sp....	141.0	[0..51]	[147..1]
gi\|42631535 - gi\|42631535\|ref\|ZP_00157073.1\| COG1825: Ribosomal protein L25 (general stress protein Ctc) [Haemophi... gi\|145641796, gi... - gi\|145641796\|ref\|ZP_01797372.1\| 50S ribosomal protein L25 [Haemophilus influenzae R3021], gi\|1449834... gi\|145639243, gi... - gi\|145639243\|ref\|ZP_01794849.1\| 50S ribosomal protein L25 [Haemophilus influenzae PittII], gi\|145271... gi\|145273610, gi... - gi\|145641796\|ref\|ZP_01797372.1\| 50S ribosomal protein L25 [Haemophilus influenzae R3021], gi\|1456309... gi\|144979544, gi... - gi\|145627769\|ref\|ZP_01783570.1\| 50S ribosomal protein L25 [Haemophilus influenzae 22.1-21], gi\|14497...	140.0	[0..54]	[148..1]
gi\|42629655 - gi\|42629655\|ref\|ZP_00155201.1\| COG1825: Ribosomal protein L25 (general stress protein Ctc) [Haemophi... RL25_HAEIG - 50S ribosomal protein L25 OS=Haemophilus influenzae (strain PittGG) GN=rplY PE=3 SV=1 gi\|229811268, gi... - gi\|229846264\|ref\|ZP_04466376.1\| 50S ribosomal protein L25 [Haemophilus influenzae 7P49H1], gi\|229811... gi\|145637517, gi... - gi\|145637517\|ref\|ZP_01793175.1\| 50S ribosomal protein L25 [Haemophilus influenzae PittHH], gi\|145269... gi\|144986257, gi... - gi\|145633031\|ref\|ZP_01788763.1\| 50S ribosomal protein L25 [Haemophilus influenzae 3655], gi\|14498625...	140.0	[0..54]	[148..1]
gi\|145635085, gi... - gi\|145635085\|ref\|ZP_01790791.1\| 50S ribosomal protein L25 [Haemophilus influenzae PittAA], gi\|145267... gi\|229844811, gi... - gi\|229844811\|ref\|ZP_04464949.1\| 50S ribosomal protein L25 [Haemophilus influenzae 6P18H1], gi\|229812... RL25_HAEI8 - 50S ribosomal protein L25 OS=Haemophilus influenzae (strain 86-028NP) GN=rplY PE=3 SV=1 RL25_HAEIE - 50S ribosomal protein L25 OS=Haemophilus influenzae (strain PittEE) GN=rplY PE=3 SV=1	139.0	[0..54]	[148..1]
RL25_HAEIN - 50S ribosomal protein L25 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... RL25_HAEIN - 50S ribosomal protein L25 OS=Haemophilus influenzae GN=rplY PE=3 SV=1	139.0	[0..54]	[148..1]
RL25_PHOLL - 50S ribosomal protein L25 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556... RL25_PHOLL - 50S ribosomal protein L25 OS=Photorhabdus luminescens subsp. laumondii GN=rplY PE=3 SV=1	138.0	[0..55]	[148..1]
RL25_HAHCH - 50S ribosomal protein L25 OS=Hahella chejuensis (strain KCTC 2396) GN=rplY PE=3 SV=1	137.0	[0..52]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIDNDNPLV PYLFRVVSFL CLLGNCVSMR ALYMSHHWSK MVTFFTLNLS EKHMSYTITA  60
   61 QTRTEIGKGS SRRLRHAGKV PAVIYGAGKE PVSIVFDHKD IINAQANDDF YTSVVTIVLD 120
  121 GKEVGVRAQA MQRHAFKPII EHVDFVYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1b75A
Description:	Ribosomal protein L25
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.20160657268678	bayes_pls_golite062009
structural molecule activity	2.91807402311048	bayes_pls_golite062009
5S rRNA binding	1.81739845276686	bayes_pls_golite062009
nucleic acid binding	1.69231105225212	bayes_pls_golite062009
binding	1.17696230219913	bayes_pls_golite062009
RNA binding	1.10721612326963	bayes_pls_golite062009
rRNA binding	1.09906733598731	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: