YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1851
Organism:	Shewanella oneidensis
Length:	711 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1851.

Description	E-value	Query Range	Subject Range
RLMKL_SHESW - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain W3-18-1) GN=rlmL PE=3 SV...	545.0	[0..1]	[709..1]
RLMKL_SHEDO - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella denitrificans (strain OS217 / ATCC B...	545.0	[0..1]	[708..1]
RLMKL_SHEPC - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella putrefaciens (strain CN-32 / ATCC BA... gi\|124547151, gi... - gi\|124547151\|ref\|ZP_01706104.1\| putative RNA methylase [Shewanella putrefaciens 200], gi\|124509451\|g...	543.0	[0..1]	[709..1]
RLMKL_SHEB9 - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella baltica (strain OS195) GN=rlmL PE=3 ...	540.0	[0..1]	[709..1]
RLML_PASMU - Ribosomal RNA large subunit methyltransferase L OS=Pasteurella multocida GN=rlmL PE=3 SV=1 RLMKL_PASMU - Ribosomal RNA large subunit methyltransferase K/L OS=Pasteurella multocida (strain Pm70) GN=rlmL PE=...	539.0	[0..1]	[709..1]
RLMKL_SHEFN - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella frigidimarina (strain NCIMB 400) GN=...	536.0	[0..1]	[711..1]
RLMKL_SHESM - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain MR-4) GN=rlmL PE=3 SV=1	532.0	[0..1]	[709..1]
RLMKL_VIBVY - Ribosomal RNA large subunit methyltransferase K/L OS=Vibrio vulnificus (strain YJ016) GN=rlmL PE=3 S...	532.0	[0..1]	[709..1]
RLMKL_SHESR - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain MR-7) GN=rlmL PE=3 SV=1	532.0	[0..1]	[709..1]
RLMKL_HAEI8 - Ribosomal RNA large subunit methyltransferase K/L OS=Haemophilus influenzae (strain 86-028NP) GN=rlm...	531.0	[0..1]	[708..1]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNFFAAAPK GFEYSLAQEL TEFGATEIKE SVAGVYFTAP LTLAYRITLW TRLASRIVLV  60
   61 IYKGPCESAE QLYNAAYCID WSAHFSNRNT FSIDFHGTGG FINNTQFGAL KIKDAIVDRF 120
  121 RDDGDARPNV ARIDADIKVD AHFRNGVITI AMNFSGPSLH QRGYRST

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.65
Match:	2dirA
Description:	No description for 2dirA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.370124335251591	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [168-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGEAPLKENL AANMLVRSGW KAAPTTLLDP FCGSGTVLIE AALMAADIAP GLQRNRFGFE  60
   61 HWRRHDKATW HEIVEEAKAR ASLGVKRCEV KFYGSDIDSR LVALAKRNAQ NAGVLELIEF 120
  121 NVANALNVEP PAAEGYLITN PPYGERLGSV SELLQLYYQL GDKFKKEFGG WKVAMLCS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	2ar0A
Description:	Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [346-711]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIELISALKL KADKQMKMFN GALECAFNLY TLHAQSTRRD TPVLPEGVDI ADIAPAFANR  60
   61 IKKNAKQFEK WAQKEGIDSY RLYDADIPEY NVAVDKYLDY VVVQEYMAPA SIPEAVTKRR 120
  121 LSDVLLALPA AIGVDPHKII MKTRERQKGT NQYQKLDERK LELITTEYGA KFKLNLTGYL 180
  181 DTGLFLDHRL TRRLVGQKSK GRRVLNLFSY TGSASVHAAL GGAKSVTTVD MSNTYLAWAK 240
  241 ENFALNNLSG KQYEFVQADC LQWIRDCNEQ YDLIFIDPPT FSNSKRMEDS FDVQRDHVNL 300
  301 LGMLIKLLSP NGELVFSNNK RKFKMDTETL TKMKIKVQNI DDMTLPLDYK RNPHIHNTWL 360
  361 ITHADK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	2as0A
Description:	Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: