YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1641
Organism:	Shewanella oneidensis
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1641.

Description	E-value	Query Range	Subject Range
gi\|160860132, gi... - gi\|160874610\|ref\|YP_001553926.1\| UDP-N-acetylglucosamine acyltransferase [Shewanella baltica OS195],... gi\|149114485, gi... - gi\|217974048\|ref\|YP_002358799.1\| UDP-N-acetylglucosamine acyltransferase [Shewanella baltica OS223],... gi\|151364607, gi... - gi\|152999989\|ref\|YP_001365670.1\| UDP-N-acetylglucosamine acyltransferase [Shewanella baltica OS185],...	209.0	[0..1]	[256..1]
gi\|68543863, gi\|... - gi\|68543863\|ref\|ZP_00583550.1\| Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferas...	209.0	[0..1]	[256..1]
gi\|82411382, gi\|... - gi\|82703317\|ref\|YP_412883.1\| acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase ...	208.0	[0..2]	[256..6]
gi\|41725333, gi\|... - gi\|71907384\|ref\|YP_284971.1\| UDP-N-acetylglucosamine acyltransferase [Dechloromonas aromatica RCB], ...	208.0	[0..1]	[256..1]
gi\|91795798, gi\|... - gi\|92112708\|ref\|YP_572636.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase ...	208.0	[0..1]	[256..1]
gi\|82742765, gi\|... - gi\|82742765\|ref\|ZP_00905445.1\| Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferas... gi\|146292463, gi... - gi\|77812974\|ref\|ZP_00812257.1\| Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferas...	207.0	[0..1]	[256..1]
gi\|78692215, gi\|... - gi\|78692215\|ref\|ZP_00856777.1\| Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferas... gi\|113970964, gi... - gi\|82496374\|ref\|ZP_00881942.1\| Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferas...	206.0	[0..1]	[256..1]
gi\|78504516, gi\|... - gi\|78687738\|ref\|ZP_00852477.1\| Acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferas...	206.0	[0..1]	[256..1]
gi\|33601594, gi\|... - gi\|33601594\|ref\|NP_889154.1\| UDP-N-acetylglucosamine acyltransferase [Bordetella bronchiseptica RB50...	205.0	[0..2]	[256..5]
gi\|33573189 - gi\|33573189\|emb\|CAE36841.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase ... gi\|33596186 - gi\|33596186\|ref\|NP_883829.1\| UDP-N-acetylglucosamine acyltransferase [Bordetella parapertussis 12822...	205.0	[0..2]	[256..5]

Back

Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDTLAFVHP DAKIGKNVTI GPWSYVGAGV EIGDDCWLSS HVVVKGPTVI GKGNRIFQFA  60
   61 SVGEECQDKK YAGEPTRLII GDNNVIREHV TIHRGTVQDN SETRIGSNNL FMNYVHIAHD 120
  121 CVVGNNVIMA NNASIAGHVH VGDWAILGGM TGVHQFVHIG AHAFTAGCSL LLQDVPPFVM 180
  181 AAGQPAIPRG LNSEGMKRRG FSKESQLAVR RAYKTLYRSS LTVEEAVEAL AEDAQNDAQV 240
  241 KLLVEFVKSS GRGIIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2jf2A
Description:	No description for 2jf2A was found.

Predicted functions:

Term	Confidence	Notes
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	4.85526297527966	bayes_pls_golite062009
O-acyltransferase activity	4.84577168407664	bayes_pls_golite062009
acyltransferase activity	2.27754650414142	bayes_pls_golite062009
catalytic activity	2.22811944286398	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.21954683775748	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.14859065831589	bayes_pls_golite062009
transferase activity	1.1230560089123	bayes_pls_golite062009
binding	0.640396679519929	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: