YRC Public Data Repository - Protein Structure Prediction

Protein:	EX5B_ECOLI
Organism:	Escherichia coli
Length:	1180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EX5B_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82778196, gi\|... - gi\|82778196\|ref\|YP_404545.1\| exonuclease V subunit beta [Shigella dysenteriae Sd197], gi\|81242344\|gb...	835.0	[0..1]	[1180..1]
gi\|242378368, gi... - gi\|251786095\|ref\|YP_003000399.1\| hypothetical protein B21_02629 [Escherichia coli BL21], gi\|24237836... gi\|254162748, gi... - gi\|254162748\|ref\|YP_003045856.1\| exonuclease V (RecBCD complex), beta subunit [Escherichia coli B st... gi\|253772326, gi... - gi\|254289507\|ref\|YP_003055255.1\| exonuclease V (RecBCD complex), beta subunit [Escherichia coli BL21... gi\|194421204, gi... - gi\|83584777\|ref\|ZP_00923439.1\| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contain...	831.0	[0..1]	[1180..1]
gi\|157079281, gi... - gi\|75187556\|ref\|ZP_00700823.1\| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contain...	830.0	[0..1]	[1180..1]
gi\|26249249, gi\|... - gi\|26249249\|ref\|NP_755289.1\| exonuclease V subunit beta [Escherichia coli CFT073], gi\|26109656\|gb\|AA...	825.0	[0..1]	[1180..4]
gi\|74313388, gi\|... - gi\|74313388\|ref\|YP_311807.1\| exonuclease V subunit beta [Shigella sonnei Ss046], gi\|73856865\|gb\|AAZ8...	825.0	[0..1]	[1180..1]
gi\|110344579, gi... - gi\|110642987\|ref\|YP_670717.1\| exonuclease V subunit beta [Escherichia coli 536], gi\|110344579\|gb\|ABG...	825.0	[0..1]	[1180..1]
gi\|75215038, gi\|... - gi\|75215038\|ref\|ZP_00713498.1\| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contain...	825.0	[0..1]	[1180..1]
gi\|75241771, gi\|... - gi\|75241771\|ref\|ZP_00725590.1\| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contain...	824.0	[0..1]	[1180..1]
gi\|82545121, gi\|... - gi\|82545121\|ref\|YP_409068.1\| exonuclease V subunit beta [Shigella boydii Sb227], gi\|81246532\|gb\|ABB6...	824.0	[0..1]	[1180..1]
gi\|193065093, gi... - gi\|75256828\|ref\|ZP_00728422.1\| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contain... gi\|194426185, gi... - gi\|75212547\|ref\|ZP_00712571.1\| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contain...	824.0	[0..1]	[1180..1]

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Predicted Domain #1

Region A:
Residues: [1-1180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVAETLDP LRLPLQGERL IEASAGTGKT FTIAALYLRL LLGLGGSAAF PRPLTVEELL  60
   61 VVTFTEAATA ELRGRIRSNI HELRIACLRE TTDNPLYERL LEEIDDKAQA AQWLLLAERQ 120
  121 MDEAAVFTIH GFCQRMLNLN AFESGMLFEQ QLIEDESLLR YQACADFWRR HCYPLPREIA 180
  181 QVVFETWKGP QALLRDINRY LQGEAPVIKA PPPDDETLAS RHAQIVARID TVKQQWRDAV 240
  241 GELDALIESS GIDRRKFNRS NQAKWIDKIS AWAEEETNSY QLPESLEKFS QRFLEDRTKA 300
  301 GGETPRHPLF EAIDQLLAEP LSIRDLVITR ALAEIRETVA REKRRRGELG FDDMLSRLDS 360
  361 ALRSESGEVL AAAIRTRFPV AMIDEFQDTD PQQYRIFRRI WHHQPETALL LIGDPKQAIY 420
  421 AFRGADIFTY MKARSEVHAH YTLDTNWRSA PGMVNSVNKL FSQTDDAFMF REIPFIPVKS 480
  481 AGKNQALRFV FKGETQPAMK MWLMEGESCG VGDYQSTMAQ VCAAQIRDWL QAGQRGEALL 540
  541 MNGDDARPVR ASDISVLVRS RQEAAQVRDA LTLLEIPSVY LSNRDSVFET LEAQEMLWLL 600
  601 QAVMTPEREN TLRSALATSM MGLNALDIET LNNDEHAWDV VVEEFDGYRQ IWRKRGVMPM 660
  661 LRALMSARNI AENLLATAGG ERRLTDILHI SELLQEAGTQ LESEHALVRW LSQHILEPDS 720
  721 NASSQQMRLE SDKHLVQIVT IHKSKGLEYP LVWLPFITNF RVQEQAFYHD RHSFEAVLDL 780
  781 NAAPESVDLA EAERLAEDLR LLYVALTRSV WHCSLGVAPL VRRRGDKKGD TDVHQSALGR 840
  841 LLQKGEPQDA AGLRTCIEAL CDDDIAWQTA QTGDNQPWQV NDVSTAELNA KTLQRLPGDN 900
  901 WRVTSYSGLQ QRGHGIAQDL MPRLDVDAAG VASVVEEPTL TPHQFPRGAS PGTFLHSLFE 960
  961 DLDFTQPVDP NWVREKLELG GFESQWEPVL TEWITAVLQA PLNETGVSLS QLSARNKQVE1020
 1021 MEFYLPISEP LIASQLDTLI RQFDPLSAGC PPLEFMQVRG MLKGFIDLVF RHEGRYYLLD1080
 1081 YKSNWLGEDS SAYTQQAMAA AMQAHRYDLQ YQLYTLALHR YLRHRIADYD YEHHFGGVIY1140
 1141 LFLRGVDKEH PQQGIYTTRP NAGLIALMDE MFAGMTLEEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1w36B
Description:	RecBCD:DNA complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits