YRC Public Data Repository - Protein Structure Prediction

Protein:	EVGA_ECOLI
Organism:	Escherichia coli
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EVGA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|98660596 - gi\|98660596\|dbj\|GAA02177.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	190.0	[0..3]	[203..8]
gi\|22299907, gi\|... - gi\|22299907\|ref\|NP_683154.1\| two-component response regulator [Thermosynechococcus elongatus BP-1], ...	187.0	[0..2]	[203..11]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	185.0	[0..2]	[203..5]
gi\|114566483, gi... - gi\|114566483\|ref\|YP_753637.1\| response regulator receiver protein [Syntrophomonas wolfei subsp. wolf...	185.0	[0..2]	[203..5]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	185.0	[0..2]	[203..5]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	184.0	[0..2]	[203..5]
gi\|109646584, gi... - gi\|68207819\|ref\|ZP_00559966.1\| Response regulator receiver:Transcriptional regulatory protein, C ter... gi\|89333300, gi\|... - gi\|89893852\|ref\|YP_517339.1\| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51], gi\|893...	184.0	[0..1]	[203..6]
gi\|68264217, gi\|... - gi\|68536618\|ref\|YP_251323.1\| two-component system response regulator TcsR5 [Corynebacterium jeikeium...	184.0	[0..1]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAIIIDDHP LAIAAIRNLL IKNDIEILAE LTEGGSAVQR VETLKPDIVI IDVDIPGVNG  60
   61 IQVLETLRKR QYSGIIIIVS AKNDHFYGKH CADAGANGFV SKKEGMNNII AAIEAAKNGY 120
  121 CYFPFSLNRF VGSLTSDQQK LDSLSKQEIS VMRYILDGKD NNDIAEKMFI SNKTVSTYKS 180
  181 RLMEKLECKS LMDLYTFAQR NKIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits