YRC Public Data Repository - Protein Structure Prediction

Protein:	EUTP_ECOLI
Organism:	Escherichia coli
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EUTP_ECOLI.

Description	E-value	Query Range	Subject Range
IF2_CLOPH - Translation initiation factor IF-2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ...	140.0	[0..4]	[157..637]
IF2_DESRM - Translation initiation factor IF-2 OS=Desulfotomaculum reducens (strain MI-1) GN=infB PE=3 SV=1	139.0	[0..4]	[157..490]
IF2_BORA1 - Translation initiation factor IF-2 OS=Bordetella avium (strain 197N) GN=infB PE=3 SV=1	139.0	[0..4]	[153..540]
gi\|113933786, gi... - gi\|113933786\|ref\|ZP_01419687.1\| translation initiation factor IF-2:Small GTP-binding protein domain ...	138.0	[0..4]	[157..581]
gi\|87125352, gi\|... - gi\|87125352\|ref\|ZP_01081198.1\| translation initiation factor [Synechococcus sp. RS9917], gi\|86167121...	138.0	[0..4]	[157..600]
IF2_BORBR - Translation initiation factor IF-2 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / ... IF2_BORBR - Translation initiation factor IF-2 OS=Bordetella bronchiseptica GN=infB PE=3 SV=1	138.0	[0..4]	[153..503]
IF2_BORPE - Translation initiation factor IF-2 OS=Bordetella pertussis GN=infB PE=3 SV=1 IF2_BORPE - Translation initiation factor IF-2 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13...	137.0	[0..4]	[153..503]
IF2_BORPA - Translation initiation factor IF-2 OS=Bordetella parapertussis GN=infB PE=3 SV=1 IF2_BORPA - Translation initiation factor IF-2 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 1...	137.0	[0..4]	[153..475]
IF2_CUPPJ - Translation initiation factor IF-2 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=infB...	137.0	[0..4]	[156..471]
IF2_DECAR - Translation initiation factor IF-2 OS=Dechloromonas aromatica (strain RCB) GN=infB PE=3 SV=1	136.0	[0..4]	[156..409]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIAFVGSV GAGKTTLFNA LQGNYTLARK TQAVEFNDKG DIDTPGEYFN HPRWYHALIT  60
   61 TLQDVDMLIY VHGANDPESR LPAGLLDIGV SKRQIAVISK TDMPDADVAA TRKLLLETGF 120
  121 EEPMFELNSH DPQSVQQLVD YLASLTKQEE AGEKTHHSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.154902
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits