YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0898
Organism:	Shewanella oneidensis
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0898.

Description	E-value	Query Range	Subject Range
gi\|115584701, gi... - gi\|32041579\|ref\|ZP_00139162.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a...	275.0	[0..3]	[173..5]
gi\|194550869, gi... - gi\|84328451\|ref\|ZP_00976458.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a... YF36_PSEAE, Y153... - (Q9I3H7) Hypothetical UPF0167 protein PA1536, UPF0167 protein PA1536 OS=Pseudomonas aeruginosa GN=PA... gi\|194545623, gi... - gi\|84321730\|ref\|ZP_00970084.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|107100967 - gi\|107100967\|ref\|ZP_01364885.1\| hypothetical protein PaerPA_01001997 [Pseudomonas aeruginosa PACS2] Y1536_PSEAE - UPF0167 protein PA1536 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222... gi\|218772734, gi... - gi\|218892508\|ref\|YP_002441375.1\| hypothetical protein PLES_37921 [Pseudomonas aeruginosa LESB58], gi...	273.0	[0..3]	[173..5]
gi\|49081776 - gi\|49081776\|gb\|AAT50288.1\| PA1536 [synthetic construct]	273.0	[0..3]	[173..5]
gi\|78507536, gi\|... - gi\|78684599\|ref\|ZP_00849382.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78507536\|gb...	261.0	[0..1]	[174..1]
gi\|253798638, gi... - gi\|253798638\|ref\|YP_003031639.1\| hypothetical protein TBMG_01688 [Mycobacterium tuberculosis KZN 143... gi\|254551335 - gi\|254551335\|ref\|ZP_05141782.1\| hypothetical protein Mtube_12880 [Mycobacterium tuberculosis '98-R60... gi\|148823495, gi... - gi\|76783830\|ref\|ZP_00771019.1\| COG3196: Uncharacterized protein conserved in bacteria [Mycobacterium... gi\|254816116 - gi\|254816116\|ref\|ZP_05221117.1\| hypothetical protein MtubKZN_10236 [Mycobacterium tuberculosis KZN 4... gi\|124601495, gi... - gi\|81253696\|ref\|ZP_00878231.1\| COG3196: Uncharacterized protein conserved in bacteria [Mycobacterium... gi\|255097100 - gi\|255097100\|ref\|ZP_05326578.1\| hypothetical protein MtubK_12944 [Mycobacterium tuberculosis KZN 605... gi\|215412031 - gi\|215412031\|ref\|ZP_03420795.1\| hypothetical protein Mtub9_11878 [Mycobacterium tuberculosis 94_M424... gi\|215403686 - gi\|215403686\|ref\|ZP_03415867.1\| hypothetical protein Mtub0_08387 [Mycobacterium tuberculosis 02_1987... gi\|121493824, gi... - gi\|121638176\|ref\|YP_978400.1\| hypothetical protein BCG_2311 [Mycobacterium bovis BCG str. Pasteur 11... gi\|215431228 - gi\|215431228\|ref\|ZP_03429147.1\| hypothetical protein MtubE_11224 [Mycobacterium tuberculosis EAS054] gi\|215427672 - gi\|215427672\|ref\|ZP_03425591.1\| hypothetical protein MtubT9_15313 [Mycobacterium tuberculosis T92] gi\|15609432, gi\|... - gi\|3261614\|emb\|CAB01001.1\| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv], gi\|156... gi\|254365075, gi... - gi\|254365075\|ref\|ZP_04981121.1\| conserved hypothetical protein [Mycobacterium tuberculosis str. Haar... gi\|218754016 - gi\|218754016\|ref\|ZP_03532812.1\| hypothetical protein MtubG1_11534 [Mycobacterium tuberculosis GM 150... gi\|148662117, gi... - gi\|167969829\|ref\|ZP_02552106.1\| hypothetical protein MtubH3_18124 [Mycobacterium tuberculosis H37Ra]... gi\|215446529 - gi\|215446529\|ref\|ZP_03433281.1\| hypothetical protein MtubT_11515 [Mycobacterium tuberculosis T85] gi\|7477148 - gi\|7477148\|pir\|\|C70733 hypothetical protein Rv2295 - Mycobacterium tuberculosis (strain H37RV) gi\|224773783, gi... - gi\|224990670\|ref\|YP_002645357.1\| hypothetical protein JTY_2305 [Mycobacterium bovis BCG str. Tokyo 1... gi\|31619066, gi\|... - gi\|31793473\|ref\|NP_855966.1\| hypothetical protein Mb2317 [Mycobacterium bovis AF2122/97], gi\|3161906... gi\|219558273 - gi\|219558273\|ref\|ZP_03537349.1\| hypothetical protein MtubT1_13607 [Mycobacterium tuberculosis T17]	257.0	[0..3]	[173..37]
Y2295_MYCTO - UPF0167 protein MT2352 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2352 PE=3 SV=1 YM95_MYCTU, Y229... - (P67309) Hypothetical UPF0167 protein Rv2295/MT2352, UPF0167 protein Rv2295/MT2352 OS=Mycobacterium ... Y2317_MYCBO - UPF0167 protein Mb2317 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2317 PE=3 SV=1 YN17_MYCBO, Y231... - (P67310) Hypothetical UPF0167 protein Mb2317, UPF0167 protein Mb2317 OS=Mycobacterium bovis GN=Mb231... Y2295_MYCTU - UPF0167 protein Rv2295 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2295 PE=1 SV=1	257.0	[0..3]	[173..12]
gi\|94415092, gi\|... - gi\|94415092\|ref\|ZP_01294941.1\| hypothetical protein PaerP_01003200 [Pseudomonas aeruginosa PA7], gi\|...	254.0	[0..3]	[173..5]
gi\|77964300, gi\|... - gi\|78059750\|ref\|YP_366325.1\| hypothetical protein Bcep18194_C6631 [Burkholderia sp. 383], gi\|7796430...	253.0	[0..1]	[175..1]
YIEJ_ECOLI - UPF0167 protein yieJ - Escherichia coli gi\|238902808, gi... - gi\|238902808\|ref\|YP_002928604.1\| hypothetical protein BWG_3408 [Escherichia coli BW2952], gi\|2388605... EG11727 - UPF0167 family protein / Required for colicin E2 tolerance; UPF0167 family; predicted to have thiol-... EG11727 - UPF0167 family protein / Required for colicin E2 tolerance; UPF0167 family; predicted to have thiol-... gi\|89110290, gi\|... - gi\|89110290\|ref\|AP_004070.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|169891054, gi... - gi\|170083219\|ref\|YP_001732539.1\| hypothetical protein ECDH10B_3904 [Escherichia coli str. K-12 subst...	245.0	[0..3]	[168..8]
gi\|157155247, gi... - gi\|75188472\|ref\|ZP_00701739.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	244.0	[0..3]	[168..8]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFPLFTYHP NPLATGAVVA SDASCQCCGK ARGFICIAGM YCVENIDAIC PWCVADGSAA  60
   61 DKFNGHFVDD YPLLEAGLDI AIVKEVAERT PGYISWQQEV WQSHCNDACE FHGDAELAEL 120
  121 QALQGESLEE FLSEYMLDRD FWQKILSGYQ KGGDLAIYKF QCRHCHKVIF TMDCN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.568636
Match:	PF03691.5
Description:	No description for PF03691.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits