YRC Public Data Repository - Protein Structure Prediction

Protein:	EUTM_ECOLI
Organism:	Escherichia coli
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EUTM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227974706, gi... - gi\|227974706\|ref\|ZP_04022994.1\| carbon dioxide concentrating mechanism/carboxysome shell protein [La... gi\|227184642, gi... - gi\|227545360\|ref\|ZP_03975409.1\| carbon dioxide concentrating mechanism/carboxysome shell protein [La... gi\|86604344 - gi\|86604344\|gb\|ABD13950.1\| propanediol utilization protein [Lactobacillus reuteri]	127.0	[0..2]	[94..3]
gi\|89079906, gi\|... - gi\|89090287\|ref\|ZP_01163338.1\| similar to carboxysome structural protein [Lactobacillus reuteri JCM ... gi\|227070877, gi... - gi\|227364087\|ref\|ZP_03848186.1\| carbon dioxide concentrating mechanism/carboxysome shell protein [La... gi\|227193426, gi... - gi\|227532018\|ref\|ZP_03962067.1\| carbon dioxide concentrating mechanism/carboxysome shell protein [La...	126.0	[0..2]	[94..3]
gi\|120557353, gi... - gi\|82742223\|ref\|ZP_00904923.1\| Propanediol utilization: polyhedral bodies [Shewanella sp. W3-18-1], ...	125.0	[0..2]	[94..4]
gi\|77814515, gi\|... - gi\|77814515\|ref\|ZP_00813774.1\| microcompartments protein [Shewanella putrefaciens CN-32], gi\|7781056...	125.0	[0..2]	[94..4]
CCMK2_SYNY3 - Carbon dioxide-concentrating mechanism protein CcmK homolog 2 OS=Synechocystis sp. (strain ATCC 2718... CCMK2_SYNY3 - Carbon dioxide-concentrating mechanism protein CcmK homolog 2 OS=Synechocystis sp. (strain PCC 6803 ... gi\|7469273 - pir\|\|S74624 carbon dioxide concentrating mechanism protein ccmK-3 - Synechocystis sp. (strain PCC 68...	124.0	[0..3]	[93..4]
CCMK_SYNP2 - Carbon dioxide concentrating mechanism protein ccmK - Synechococcus sp. (strain PCC 7002) (Agmenellu...	124.0	[0..3]	[93..4]
gi\|37542642 - gi\|37542642\|gb\|AAL38399.1\| GldA [Lactobacillus collinoides]	124.0	[0..2]	[87..4]
gi\|74312982, gi\|... - gi\|74312982\|ref\|YP_311401.1\| detox protein [Shigella sonnei Ss046], gi\|73856459\|gb\|AAZ89166.1\| detox...	123.0	[0..1]	[97..15]
gi\|90414630, gi\|... - gi\|90414630\|ref\|ZP_01222602.1\| probable ethanolamine utilization protein (EutM) [Photobacterium prof...	123.0	[0..1]	[89..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEALGMIETR GLVALIEASD AMVKAARVKL VGVKQIGGGL CTAMVRGDVA ACKAATDAGA  60
   61 AAAQRIGELV SVHVIPRPHG DLEEVFPIGL KGDSSNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	2a1bA
Description:	Carboxysome shell protein ccmK2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits