YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0568
Organism:	Shewanella oneidensis
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0568.

Description	E-value	Query Range	Subject Range
gi\|77978584, gi\|... - gi\|77978584\|ref\|ZP_00834011.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia inte...	176.0	[0..1]	[120..23]
gi\|77960005 - gi\|77960005\|ref\|ZP_00823909.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia moll...	176.0	[0..1]	[120..23]
gi\|148826657, gi... - gi\|148826657\|ref\|YP_001291410.1\| hypothetical protein CGSHiEE_08640 [Haemophilus influenzae PittEE],... gi\|68057474, gi\|... - gi\|68249275\|ref\|YP_248387.1\| hypothetical protein NTHI0823 [Haemophilus influenzae 86-028NP], gi\|680...	176.0	[0..5]	[120..2]
gi\|77974069, gi\|... - gi\|77974069\|ref\|ZP_00829612.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia fred...	176.0	[0..1]	[119..23]
Y700_HAEIN, YJGD... - (P44831) Protein HI0700, Uncharacterized protein HI_0700 OS=Haemophilus influenzae GN=HI_0700 PE=1 S... RRAB_HAEIN - Regulator of ribonuclease activity B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20...	174.0	[0..5]	[120..2]
gi\|238715531, gi... - gi\|77956489\|ref\|ZP_00820583.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia berc...	174.0	[0..1]	[115..23]
gi\|145600509, gi... - gi\|145600509\|ref\|YP_001164585.1\| hypothetical protein YPDSF_3255 [Yersinia pestis Pestoides F], gi\|1... gi\|89101648, gi\|... - gi\|89101648\|ref\|ZP_01174363.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|149289150, gi... - gi\|153997513\|ref\|ZP_02022613.1\| hypothetical protein YPE_3969 [Yersinia pestis CA88-4125], gi\|149289... gi\|21957463, gi\|... - gi\|22124654\|ref\|NP_668077.1\| hypothetical protein y0741 [Yersinia pestis KIM], gi\|21957463\|gb\|AAM843... gi\|25355027 - pir\|\|AG0418 conserved hypothetical protein YPO3445 [imported] - Yersinia pestis (strain CO92) gi\|51594879, gi\|... - gi\|51594879\|ref\|YP_069070.1\| hypothetical protein YPTB0527 [Yersinia pseudotuberculosis IP 32953], g... gi\|45440491, gi\|... - gi\|45440491\|ref\|NP_992030.1\| hypothetical protein YP_0639 [Yersinia pestis biovar Microtus str. 9100... gi\|15981371, gi\|... - gi\|218930461\|ref\|YP_002348336.1\| hypothetical protein YPO3445 [Yersinia pestis CO92], gi\|16123593\|re... gi\|108808937, gi... - gi\|108808937\|ref\|YP_652853.1\| hypothetical protein YPA_2946 [Yersinia pestis Antiqua], gi\|108780850\|... gi\|229901011, gi... - gi\|229901011\|ref\|ZP_04516135.1\| ribonuclease E inhibitor protein [Yersinia pestis Nepal516], gi\|2296... gi\|77631522, gi\|... - gi\|77631522\|ref\|ZP_00794108.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|165922281, gi... - gi\|165925669\|ref\|ZP_02221501.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166010164, gi... - gi\|166010164\|ref\|ZP_02231062.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204523, gi... - gi\|166214291\|ref\|ZP_02240326.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167051029, gi... - gi\|167398525\|ref\|ZP_02304049.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q66F13\|Q66F13_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167420529, gi... - gi\|167420529\|ref\|ZP_02312282.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167423398, gi... - gi\|167423398\|ref\|ZP_02315151.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|170025898, gi... - gi\|170025898\|ref\|YP_001722403.1\| hypothetical protein YPK_3683 [Yersinia pseudotuberculosis YPIII], ... gi\|186893889, gi... - gi\|186893889\|ref\|YP_001871001.1\| hypothetical protein YPTS_0558 [Yersinia pseudotuberculosis PB1/+],... gi\|229687147, gi... - gi\|229899655\|ref\|ZP_04514796.1\| ribonuclease E inhibitor protein [Yersinia pestis biovar Orientalis ... gi\|229700358, gi... - gi\|229896580\|ref\|ZP_04511747.1\| ribonuclease E inhibitor protein [Yersinia pestis Pestoides A], gi\|2... gi\|229695458, gi... - gi\|229839092\|ref\|ZP_04459251.1\| ribonuclease E inhibitor protein [Yersinia pestis biovar Orientalis ... gi\|162354500, gi... - gi\|77634906\|ref\|ZP_00796998.1\| COG3076: Uncharacterized protein conserved in bacteria [Yersinia pest...	174.0	[0..1]	[120..1]
gi\|148719114, gi... - gi\|148827872\|ref\|YP_001292625.1\| hypothetical protein CGSHiGG_06790 [Haemophilus influenzae PittGG],... gi\|42628986 - gi\|42628986\|ref\|ZP_00154537.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus i...	173.0	[0..5]	[124..2]
gi\|42630963 - gi\|42630963\|ref\|ZP_00156501.1\| COG3076: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|144982827 - gi\|144982827\|gb\|EDJ90349.1\| hypothetical protein CGSHi22421_09885 [Haemophilus influenzae R3021] gi\|145639459, gi... - gi\|145639459\|ref\|ZP_01795064.1\| hypothetical protein CGSHiII_04777 [Haemophilus influenzae PittII], ... gi\|145631558 - gi\|145631558\|ref\|ZP_01787325.1\| hypothetical protein CGSHi22421_09885 [Haemophilus influenzae 22.4-2...	173.0	[0..5]	[120..2]
gi\|37528310, gi\|... - gi\|37528310\|ref\|NP_931655.1\| hypothetical protein plu4489 [Photorhabdus luminescens subsp. laumondii...	169.0	[0..1]	[115..1]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIESQLKAQ FAENRDIVQA LLDDGSEPDA EYTIEHHFSS SNFERLEKAA VDAFKLGFEV  60
   61 NDAEEMELED GSVIFCFDAI AYHKLEVPLL DKATEQLLQL AAKQKVDYDG WGTYFVGDEI 120
  121 DDEEDDEQDD GFPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1nxiA
Description:	Hypothetical protein VC0424
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits