YRC Public Data Repository - Protein Structure Prediction

Protein:	SO0169
Organism:	Shewanella oneidensis
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0169.

Description	E-value	Query Range	Subject Range
gi\|117918612, gi... - gi\|78685479\|ref\|ZP_00850257.1\| General secretion pathway protein G [Shewanella sp. ANA-3], gi\|785068...	191.0	[0..1]	[144..1]
gi\|82406189, gi\|... - gi\|82495884\|ref\|ZP_00881457.1\| General secretion pathway protein G [Shewanella sp. MR-4], gi\|8240618... gi\|113887109, gi... - gi\|78689146\|ref\|ZP_00853811.1\| General secretion pathway protein G [Shewanella sp. MR-7], gi\|7851154...	191.0	[0..1]	[144..1]
gi\|160858804, gi... - gi\|160873282\|ref\|YP_001552598.1\| general secretion pathway protein G [Shewanella baltica OS195], gi\|... gi\|217496504, gi... - gi\|217971369\|ref\|YP_002356120.1\| general secretion pathway protein G [Shewanella baltica OS223], gi\|...	190.0	[0..1]	[144..1]
gi\|68541301, gi\|... - gi\|68541301\|ref\|ZP_00581046.1\| General secretion pathway protein G [Shewanella baltica OS155], gi\|68...	188.0	[0..1]	[144..1]
gi\|124508691, gi... - gi\|124548115\|ref\|ZP_01706881.1\| general secretion pathway protein G [Shewanella putrefaciens 200], g... gi\|120600490, gi... - gi\|82741859\|ref\|ZP_00904570.1\| General secretion pathway protein G [Shewanella sp. W3-18-1], gi\|8272...	188.0	[0..1]	[144..1]
gi\|77811490, gi\|... - gi\|77813399\|ref\|ZP_00812674.1\| General secretion pathway protein G [Shewanella putrefaciens CN-32], ...	187.0	[0..1]	[144..1]
gi\|126639839, gi... - gi\|78366001\|ref\|ZP_00836284.1\| General secretion pathway protein G [Shewanella sp. PV-4], gi\|7836190...	185.0	[0..1]	[144..1]
GSPG_AERHY - Type II secretion system protein G OS=Aeromonas hydrophila GN=exeG PE=3 SV=1	185.0	[0..2]	[144..1]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	185.0	[0..1]	[140..1]
gi\|114332589, gi... - gi\|69951920\|ref\|ZP_00639532.1\| General secretion pathway protein G [Shewanella frigidimarina NCIMB 4...	185.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQMNKKHKGF TLLEVMVVIV ILGILASMVV PNLMGNKDKA DQQKAVSDIV ALENALDMYK  60
   61 LDNGVYPTTE QGLEALVQKP TISPEPRNYR EEGYVKRLPQ DPWRNNYLLL SPGENSKLDI 120
  121 FSAGPDSQPG TEDDIGNWNL QNFQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	8.7545256796234	bayes_pls_golite062009
transporter activity	2.74044424168852	bayes_pls_golite062009
substrate-specific transporter activity	2.55698329173896	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: