YRC Public Data Repository - Protein Structure Prediction

Protein:	ESSQ_ECOLI
Organism:	Escherichia coli
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESSQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56682768 - gi\|56682768\|gb\|AAW21763.1\| S [Stx1-converting phage phi-O153] gi\|254592217, gi... - gi\|254792817\|ref\|YP_003077654.1\| lysis protein [Escherichia coli O157:H7 str. TW14359], gi\|254592217...	139.0	[0..1]	[71..26]
gi\|9633440, gi\|5... - gi\|9633440\|ref\|NP_050543.1\| lysis protein [Enterobacteria phage VT2-Sakai], gi\|5881636\|dbj\|BAA84327.... gi\|32170987, gi\|... - gi\|32170987\|ref\|NP_859232.1\| lysis protein [Stx1 converting phage], gi\|32128165\|dbj\|BAC77969.1\| lysi...	138.0	[0..1]	[71..26]
gi\|15802642, gi\|... - gi\|15802642\|ref\|NP_288669.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157:H7 ... gi\|25371799 - pir\|\|D85845 probable lysis protein S of prophage CP-933V Z3340 [imported] - Escherichia coli (strain... gi\|254593381, gi... - gi\|254793981\|ref\|YP_003078818.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157...	137.0	[0..1]	[71..20]
gi\|26107703, gi\|... - gi\|26247302\|ref\|NP_753342.1\| lambdoid prophage DLP12 lysis protein S [Escherichia coli CFT073], gi\|2...	137.0	[0..1]	[71..36]
gi\|91072084, gi\|... - gi\|91210510\|ref\|YP_540496.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli ... gi\|117623489, gi... - gi\|117623489\|ref\|YP_852402.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli... gi\|218558209, gi... - gi\|218558209\|ref\|YP_002391122.1\| Lysis protein S homolog from lambdoid prophage [Escherichia coli S8... gi\|226900007, gi... - gi\|237705250\|ref\|ZP_04535731.1\| lambdoid prophage DLP12 lysis protein S [Escherichia sp. 3_2_53FAA],...	135.0	[0..1]	[71..36]
gi\|115512737, gi... - gi\|117623613\|ref\|YP_852526.1\| phage lysis protein [Escherichia coli APEC O1], gi\|115512737\|gb\|ABJ008...	135.0	[0..1]	[71..30]
gi\|7466619, gi\|1... - gi\|7466619\|pir\|\|G64910 lysis protein S.b1556 - Escherichia coli (strain K-12) cryptic prophage, dbj\|... gi\|1787838, gi\|4... - gi\|49176122\|ref\|NP_416074.3\| Qin prophage [Escherichia coli K12], gb\|AAC74629.1\| lysis protein S hom...	134.0	[0..1]	[71..26]
gi\|83569537 - gi\|83569537\|ref\|ZP_00920989.1\| hypothetical protein Sdys1_01002193 [Shigella dysenteriae 1012]	134.0	[0..1]	[71..11]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMDKLTTG VAYGTSAGNA GFWALQLLDK VTPSQWAAIG VLGSLVFGLL TYLTNLYFKI  60
   61 KEDRRKAARG E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.148742
Match:	PF04971.3
Description:	No description for PF04971.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.847	N/A	N/A	a.144.1	PABC (PABP) domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits