YRC Public Data Repository - Protein Structure Prediction

Protein:	ESSD_ECOLI
Organism:	Escherichia coli
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESSD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|56682768 - gi\|56682768\|gb\|AAW21763.1\| S [Stx1-converting phage phi-O153] gi\|254592217, gi... - gi\|254792817\|ref\|YP_003077654.1\| lysis protein [Escherichia coli O157:H7 str. TW14359], gi\|254592217...	142.0	[0..1]	[71..26]
gi\|9633440, gi\|5... - gi\|9633440\|ref\|NP_050543.1\| lysis protein [Enterobacteria phage VT2-Sakai], gi\|5881636\|dbj\|BAA84327.... gi\|32170987, gi\|... - gi\|32170987\|ref\|NP_859232.1\| lysis protein [Stx1 converting phage], gi\|32128165\|dbj\|BAC77969.1\| lysi...	141.0	[0..1]	[71..26]
gi\|15802642, gi\|... - gi\|15802642\|ref\|NP_288669.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157:H7 ... gi\|25371799 - pir\|\|D85845 probable lysis protein S of prophage CP-933V Z3340 [imported] - Escherichia coli (strain... gi\|254593381, gi... - gi\|254793981\|ref\|YP_003078818.1\| putative lysis protein S of prophage CP-933V [Escherichia coli O157...	139.0	[0..1]	[71..20]
gi\|26107703, gi\|... - gi\|26247302\|ref\|NP_753342.1\| lambdoid prophage DLP12 lysis protein S [Escherichia coli CFT073], gi\|2...	139.0	[0..1]	[71..36]
gi\|115512737, gi... - gi\|117623613\|ref\|YP_852526.1\| phage lysis protein [Escherichia coli APEC O1], gi\|115512737\|gb\|ABJ008...	138.0	[0..1]	[71..30]
gi\|91072084, gi\|... - gi\|91210510\|ref\|YP_540496.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli ... gi\|117623489, gi... - gi\|117623489\|ref\|YP_852402.1\| lambdoid prophage DLP12 lysis protein S-like protein [Escherichia coli... gi\|218558209, gi... - gi\|218558209\|ref\|YP_002391122.1\| Lysis protein S homolog from lambdoid prophage [Escherichia coli S8... gi\|226900007, gi... - gi\|237705250\|ref\|ZP_04535731.1\| lambdoid prophage DLP12 lysis protein S [Escherichia sp. 3_2_53FAA],...	138.0	[0..1]	[71..36]
gi\|83569537 - gi\|83569537\|ref\|ZP_00920989.1\| hypothetical protein Sdys1_01002193 [Shigella dysenteriae 1012]	137.0	[0..1]	[71..11]
gi\|7466619, gi\|1... - gi\|7466619\|pir\|\|G64910 lysis protein S.b1556 - Escherichia coli (strain K-12) cryptic prophage, dbj\|... gi\|1787838, gi\|4... - gi\|49176122\|ref\|NP_416074.3\| Qin prophage [Escherichia coli K12], gb\|AAC74629.1\| lysis protein S hom...	137.0	[0..1]	[71..26]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSMDKLTTG VAYGTSAGSA GYWFLQLLDK VTPSQWAAIG VLGSLVFGLL TYLTNLYFKI  60
   61 KEDKRKAARG E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.21467
Match:	PF04971.3
Description:	No description for PF04971.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.829	0.492	cytolysis	a.50.1	Anaphylotoxins (complement system)
View	Download	0.783	0.009	cell wall macromolecule catabolic process	a.65.1	Annexin
View	Download	0.847	0.003	cell wall macromolecule catabolic process	a.144.1	PABC (PABP) domain
View	Download	0.760	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.677	N/A	N/A	a.50.1	Anaphylotoxins (complement system)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits