YRC Public Data Repository - Protein Structure Prediction

Protein:	ENVR_ECOLI
Organism:	Escherichia coli
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENVR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|71838703, gi\|... - gi\|71838703\|ref\|ZP_00678460.1\| regulatory protein, TetR [Pelobacter propionicus DSM 2379], gi\|717407...	147.0	[0..1]	[200..20]
gi\|26110284, gi\|... - gi\|26249856\|ref\|NP_755896.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli CFT073], g...	145.0	[0..1]	[220..1]
gi\|191169152, gi... - gi\|75227556\|ref\|ZP_00714313.1\| COG1309: Transcriptional regulator [Escherichia coli B7A], gi\|1911691... gi\|209920736, gi... - gi\|209920736\|ref\|YP_002294820.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli SE11],... gi\|75255433, gi\|... - gi\|75255433\|ref\|ZP_00727241.1\| COG1309: Transcriptional regulator [Escherichia coli E22], gi\|1930664... gi\|218696963, gi... - gi\|218696963\|ref\|YP_002404630.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli 55989]... gi\|194411713, gi... - gi\|75208484\|ref\|ZP_00708806.1\| COG1309: Transcriptional regulator [Escherichia coli B171], gi\|194430... gi\|193071532, gi... - gi\|75214925\|ref\|ZP_00713402.1\| COG1309: Transcriptional regulator [Escherichia coli E110019], gi\|193... gi\|81247046, gi\|... - gi\|82545635\|ref\|YP_409582.1\| DNA-binding transcriptional regulator EnvR [Shigella boydii Sb227], gi\|... gi\|187428634, gi... - gi\|75176271\|ref\|ZP_00696423.1\| COG1309: Transcriptional regulator [Shigella boydii BS512], gi\|187731...	145.0	[0..1]	[220..1]
gi\|227887990, gi... - gi\|227887990\|ref\|ZP_04005795.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli 83972],... gi\|226899018, gi... - gi\|237705978\|ref\|ZP_04536459.1\| DNA-binding transcriptional regulator EnvR [Escherichia sp. 3_2_53FA... gi\|115514678, gi... - gi\|117625554\|ref\|YP_858877.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli APEC O1],... gi\|91212695, gi\|... - gi\|91212695\|ref\|YP_542681.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli UTI89], gi... gi\|215266643, gi... - gi\|215488571\|ref\|YP_002331002.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli O127:H... gi\|218367102, gi... - gi\|218560333\|ref\|YP_002393246.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli S88], ... gi\|218429119, gi... - gi\|218691555\|ref\|YP_002399767.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli ED1a],...	144.0	[0..1]	[220..1]
gi\|110345100, gi... - gi\|110643508\|ref\|YP_671238.1\| DNA-binding transcriptional regulator EnvR [Escherichia coli 536], gi\|... gi\|190905876, gi... - gi\|75237875\|ref\|ZP_00721886.1\| COG1309: Transcriptional regulator [Escherichia coli F11], gi\|1911738...	143.0	[0..1]	[220..1]
gi\|36787146, gi\|... - gi\|37527710\|ref\|NP_931055.1\| DNA-binding transcriptional repressor AcrR [Photorhabdus luminescens su...	142.0	[0..1]	[202..1]
gi\|74313793, gi\|... - gi\|74313793\|ref\|YP_312212.1\| DNA-binding transcriptional regulator EnvR [Shigella sonnei Ss046], gi\|...	142.0	[0..1]	[220..1]
gi\|197284045, gi... - gi\|197284045\|ref\|YP_002149917.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Pro... gi\|227358084, gi... - gi\|227358084\|ref\|ZP_03842426.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Prot... gi\|17973458 - gi\|17973458\|gb\|AAL32124.1\| regulatory protein AcrR [Proteus mirabilis]	142.0	[0..1]	[204..1]
gi\|50120110, gi\|... - gi\|50120110\|ref\|YP_049277.1\| DNA-binding transcriptional repressor AcrR [Pectobacterium atrosepticum...	140.0	[0..1]	[212..1]
gi\|213924937, gi... - gi\|213970265\|ref\|ZP_03398395.1\| transcriptional regulator, TetR family [Pseudomonas syringae pv. tom... gi\|28854690, gi\|... - gi\|28871439\|ref\|NP_794058.1\| TetR family transcriptional regulator [Pseudomonas syringae pv. tomato ... tr\|Q87X86\|Q87X86... - Transcriptional regulator, TetR family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4...	140.0	[0..1]	[219..1]

Back

Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKRTKAEAL KTRQELIETA IAQFAQHGVS KTTLNDIADA ANVTRGAIYW HFENKTQLFN  60
   61 EMWLQQPSLR ELIQEHLTAG LEHDPFQQLR EKLIVGLQYI AKIPRQQALL KILYHKCEFN 120
  121 DEMLAEGVIR EKMGFNPQTL REVLQACQQQ GCVANNLDLD VVMIIIDGAF SGIVQNWLMN 180
  181 MAGYDLYKQA PALVDNVLRM FMPDENITKL IHQTNELSVM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	2uxhA
Description:	No description for 2uxhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits